Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03807 ATGGGTTGTGTGGAGTCCAACGATGATGAAGGTGCATACATGTTGAAGCTTCTGAATGCACTCAAACCCCCTGGCTGGTCCAACACCACTCACATGTGCCAGTGGATTGGCGTGACTTGCAACCATCAAAGTGGAAGGATTGAAGAGATCGAGCTCAGATCAATGTCTCTGACGGGAACAGTTCCTGCAGGCCTCAACGACTCCCTCTCCCAACTCACGGTACTCGATCTCTCCCACAATAATCTCAGTGGCCCTGTTCCCTCCCTCGCCAACCTCACCTTCCTCCAAGGAGTGGACCTCGGCTACAACAATTTCACCACCATCCCTCATGGTTGCTTCCATGGTCTTACTAGTTTGCAGTACTTGATCTTGAATAACAACACCAACCTCCCACCATGGAGCTTTTCTACCGATTTGACTGCTCACTCCTCCCAACTCCGTTTCCTCCACCTCTCTTCTACGAATCTCATGGGCTCCTTACCAAACATATCCCATTCCTTCCCAGTTATGGAGAATCTTTATCTTTCTAACAACAACCTCTCCTCCATCCCTGAGGGTTGCTTCCACAACCTAACCAGTTTGGATGGCCTCTTTTTGGCCAACAACACCAACCTCCCACCATGGACCTTCCCCCTCGATTTGACTCATTCCTCATTCAAACTCTCCTACCTCTTACTCCAGGCTACAAATCTCATGGGATCCCTACCAAACTTATCTCATTTCTTCCCCGACTTGATTACCGTTTCTCTCTCCAACAACAACCTTACCTCCATCCCCCAAGGTTGCTTCCAGGGTCTACCCTCTTTGATGTGGCTGTGGTTGGAAAACAACACCAACCTCGCACCATGGACCTTCCCCGACTTGATTCAGTCCACAGAACTGAAAGAGCTCAAACTTGCTGCTACAAATGTTGTGGGCCCTCTACCAGAAATATTTGACTCCTTGACAAGTTTGGAGACTGTTCTTCTCTCCAACAACAACCTCAGCGGTGTCTTGCCAGAGTCTTTCGGAGGGACCAAGATTGCCACCTTGCATCTCAATAACCAGAAGGGTAACGGGTTTTCGGGTCCGATTGATGTCCTTTCAAACATGCTCGACTTATCTCAAGTCTGGCTTCAAGGGAACTCGTTTACAGGACCTATTCCTGACATGTCTCGTTGCACTTCTTTACAAGATTTACAACTTGGTCACAATCAATTAACAGGTGTGGTTCCAGATTCGCTCATCGCTCTTCAAAATTTGGAATATCTTTATTTGGGCTATAACTTTTTGCAAGGTCCTCTACCAAATCTTACCTTCAGTGATTTTGATAGTATGGAGAATCTTGGTGTTAACATCACAAATGGCTTCTGTCACAAAGATCCAGGACCTTGTGATCACAAAGTGACCATTTTGCTTCAAATTGCTGCGAAATTCAAGTATCCAATTATGTTGGCACGTTCATGGAGAGGAAATAATGCCTGTAAAAACTGGAGTTTCATTATATGTGATGACAAAAATAAGATCAGAATGGTGAATTTATCAAATCTGAAATTGACGGGCACAATCTCACCTGCATTCGCCAATTTAACAGATTTGCGGGAATTGTATTTGGATGGGAATAATTTGACGGGTGAAATACCAGAAGGATTGACAACATTGCCTGAACTTGAAGTTATGAATGTCTCTAACAACCACCTTGCTGGAAATATTCCCAAATTCTCACCAAAGGTCAACTTTATTGCCACAGACAATGATTTTCCTAATGCTTTCCACAATAGAATCTCAACTGCTTTGATTACAGGACAAGGTGGATATGGCACTGTATACAAAGCAAGTTTAACTGATGGTCGTCAAGTTGCGATAAAGATATTAAGTGAATCTAAGGGAAGCGGGGAAGAATTCATAAATGAAGTTGCTAGTATTAGTAGGACATCTCATGTGAATATTGTCTCACTTTTAGGATTTTGTTATGATCAAGGCAAAAGAGCACTCATTTATGAATTCATGCCTAATGGTTCTCTAGATAAATACATCTACAAAGCAAAATCTCCCGAATCTTTTTGCAGTTTGGATTGGAGCATTTTGTACAACATTGCAATTGGTATTGCTCAAGGGTTAGAGTACTTGCATCAAGGATGTACAACAAAAATTTTGCATCTTGATATAAAACCTGAAAACATTCTTCTAGATGAACATTTTTGTCCAAAAATCTCAGATTTTGGATTAGCTCGAATCTGTCAAAAGAAAGAGAGTAATGTATCTATTTTAGGCACAAGAGGAACTCCAGGTTACATTGCACCAGAAATCTTTAGTCGAGCATATGGTAGAATTTCTGATAAATCTGATGTATATAGTTATGGTATGTTGATTCTTGAGATGTTCGGAAAAAGAAAAAACTTCAACAATAAAGAATCGCATCGCAATGAAATGTATTTTCCTGACTGGATATATGAAGATCTTGATCAAAGTAATATTCTCGGTAGACAACAGGCTGATATTTCAGATGAAGATAATGATATGATAAAGAAGATTATATTAGTAAGTTTGTGGTGTATTCAACCAAATCCATCACATAGACCATCAATGAGTAAAGTTGTGGAAATGTTGCATGGAGAACTTGAGTCCATACCATTTCCTCCAAAGCCTGTGTTGTATTCTCCTGAAAGGTGTCAGTTAGAAATTTTAGATACATCTTCTAGTAGCAAGCATGAGACAATTTTAACAACCACAGAGGAAAGTAGTTCCATACATGAGATCAATAAAAATGTCTCATGTTAA 2760 0.4105 MGCVESNDDEGAYMLKLLNALKPPGWSNTTHMCQWIGVTCNHQSGRIEEIELRSMSLTGTVPAGLNDSLSQLTVLDLSHNNLSGPVPSLANLTFLQGVDLGYNNFTTIPHGCFHGLTSLQYLILNNNTNLPPWSFSTDLTAHSSQLRFLHLSSTNLMGSLPNISHSFPVMENLYLSNNNLSSIPEGCFHNLTSLDGLFLANNTNLPPWTFPLDLTHSSFKLSYLLLQATNLMGSLPNLSHFFPDLITVSLSNNNLTSIPQGCFQGLPSLMWLWLENNTNLAPWTFPDLIQSTELKELKLAATNVVGPLPEIFDSLTSLETVLLSNNNLSGVLPESFGGTKIATLHLNNQKGNGFSGPIDVLSNMLDLSQVWLQGNSFTGPIPDMSRCTSLQDLQLGHNQLTGVVPDSLIALQNLEYLYLGYNFLQGPLPNLTFSDFDSMENLGVNITNGFCHKDPGPCDHKVTILLQIAAKFKYPIMLARSWRGNNACKNWSFIICDDKNKIRMVNLSNLKLTGTISPAFANLTDLRELYLDGNNLTGEIPEGLTTLPELEVMNVSNNHLAGNIPKFSPKVNFIATDNDFPNAFHNRISTALITGQGGYGTVYKASLTDGRQVAIKILSESKGSGEEFINEVASISRTSHVNIVSLLGFCYDQGKRALIYEFMPNGSLDKYIYKAKSPESFCSLDWSILYNIAIGIAQGLEYLHQGCTTKILHLDIKPENILLDEHFCPKISDFGLARICQKKESNVSILGTRGTPGYIAPEIFSRAYGRISDKSDVYSYGMLILEMFGKRKNFNNKESHRNEMYFPDWIYEDLDQSNILGRQQADISDEDNDMIKKIILVSLWCIQPNPSHRPSMSKVVEMLHGELESIPFPPKPVLYSPERCQLEILDTSSSSKHETILTTTEESSSIHEINKNVSC 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03807 919 Gene3D Ribonuclease Inhibitor 209 443 IPR032675 -
Aip04g03807 919 Gene3D Transferase(Phosphotransferase) domain 1 664 870 - -
Aip04g03807 919 PANTHER RECEPTOR-LIKE KINASE TMK4 586 864 - -
Aip04g03807 919 ProSitePatterns Serine/Threonine protein kinases active-site signature. 711 723 IPR008271 GO:0004672|GO:0006468
Aip04g03807 919 Pfam Leucine rich repeat 95 156 IPR001611 GO:0005515
Aip04g03807 919 Pfam Leucine rich repeat 221 277 IPR001611 GO:0005515
Aip04g03807 919 Pfam Leucine rich repeat 502 560 IPR001611 GO:0005515
Aip04g03807 919 Pfam Leucine rich repeat 388 422 IPR001611 GO:0005515
Aip04g03807 919 Gene3D Ribonuclease Inhibitor 129 208 IPR032675 -
Aip04g03807 919 SUPERFAMILY L domain-like 30 348 - -
Aip04g03807 919 Pfam Protein kinase domain 595 861 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g03807 919 SMART LRR_typ_2 167 190 IPR003591 -
Aip04g03807 919 SMART LRR_typ_2 523 547 IPR003591 -
Aip04g03807 919 SMART LRR_typ_2 69 91 IPR003591 -
Aip04g03807 919 SMART LRR_typ_2 315 338 IPR003591 -
Aip04g03807 919 SMART LRR_typ_2 92 115 IPR003591 -
Aip04g03807 919 SMART LRR_typ_2 411 435 IPR003591 -
Aip04g03807 919 SMART LRR_typ_2 191 212 IPR003591 -
Aip04g03807 919 SMART LRR_typ_2 266 287 IPR003591 -
Aip04g03807 919 SMART LRR_typ_2 242 265 IPR003591 -
Aip04g03807 919 SMART LRR_typ_2 116 137 IPR003591 -
Aip04g03807 919 SMART LRR_typ_2 387 410 IPR003591 -
Aip04g03807 919 Gene3D Phosphorylase Kinase; domain 1 594 663 - -
Aip04g03807 919 PANTHER OSJNBA0070M12.3 PROTEIN 8 180 - -
Aip04g03807 919 PANTHER OSJNBA0070M12.3 PROTEIN 221 580 - -
Aip04g03807 919 Gene3D Ribonuclease Inhibitor 13 114 IPR032675 -
Aip04g03807 919 Gene3D Ribonuclease Inhibitor 459 579 IPR032675 -
Aip04g03807 919 PANTHER RECEPTOR-LIKE KINASE TMK4 171 256 - -
Aip04g03807 919 SUPERFAMILY L domain-like 286 568 - -
Aip04g03807 919 CDD STKc_IRAK 595 863 - -
Aip04g03807 919 Pfam Leucine rich repeat N-terminal domain 8 41 IPR013210 -
Aip04g03807 919 Pfam Leucine rich repeat N-terminal domain 464 497 IPR013210 -
Aip04g03807 919 PRINTS Leucine-rich repeat signature 72 85 - -
Aip04g03807 919 PRINTS Leucine-rich repeat signature 547 560 - -
Aip04g03807 919 PANTHER OSJNBA0070M12.3 PROTEIN 586 864 - -
Aip04g03807 919 ProSiteProfiles Protein kinase domain profile. 588 867 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g03807 919 SUPERFAMILY Protein kinase-like (PK-like) 581 863 IPR011009 -
Aip04g03807 919 SMART LRR_sd22_2 523 546 - -
Aip04g03807 919 SMART LRR_sd22_2 411 444 - -
Aip04g03807 919 SMART LRR_sd22_2 69 94 - -
Aip04g03807 919 PANTHER OSJNBA0070M12.3 PROTEIN 171 256 - -
Aip04g03807 919 ProSiteProfiles Leucine-rich repeat profile. 71 93 IPR001611 GO:0005515
Aip04g03807 919 PANTHER RECEPTOR-LIKE KINASE TMK4 8 180 - -
Aip04g03807 919 PANTHER RECEPTOR-LIKE KINASE TMK4 221 580 - -
Aip04g03807 919 Pfam Leucine Rich Repeat 71 92 IPR001611 GO:0005515
Aip04g03807 919 ProSiteProfiles Leucine-rich repeat profile. 169 190 IPR001611 GO:0005515
Aip04g03807 919 SMART serkin_6 588 867 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03807 Aip-Chr4 132317682 132321113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03807 589 892 Receptor kinase-like Gene Family AT5G38280 58.117 3.69e-117 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Aip04g03807 Pkinase 3.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03807 - - aip:107637472 1831.22