Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03800 ATGACCTCTGTCCTTTCTGATGAACGAGAAGCTGCATACATGTTGAAGCTTATGAATGCACTCAAACCCCCTGCCTGGTCCAACACGAAGCCCGTGTGCGACTGGATAGGCGTGGCTTGCAACAATCAAAGTGGAAGGATTGAACAGATCTTTATCAATTCAATGTCACTGACGGGAACAGTTCCTGCAGGCCTCAACGACTCCCTCTCCCAACTCACATATCTCGATCTCTCCGACAATAATCTGAGTGGGCCTGTTCCCTCTCTCGCCAACCTCTCTTTCCTCCAAGTAGCGTACCTCGACAACAACAACTTCACCACCATCCCTCATGGTTGCTTCCATGGTCTTACTAGTTTGCGGCACTTGAGCTTGAATAACAACACCAACCTCCCACCATGGAACTTTCCTACCGATTTGACTGCTCACTCCTCCCATCTCCATACCCTCGACCTGTCTTCTACAAATCTCAAAGGCTCCTTACCACCAAACATATCCCATTCCTTCCCAGTTATGGAGTATCTTTATCTCTCTAACAACAACCTCTCCTCCATTCCTGAGGGTTGCTTCCACAACCTAACCAGTTTGACTAGTCTCCAGTTGGCCAACAACACCAACCTCTCACCATGGACCTTCCCCCTCGATTTGACTCATTCCTCATTGCAACTCTACCACCTCGACCTCGAGGCTACAAATCTCATGGGATCCCTACCATACTTGTCTCATTTCTTCCCACATTTGAACCTAGTCTCACTCTCTAACAACAACCTCTCCTCCATCCCTGAGGGTTGCTTCCACAACCTAACCAGTTTGAATGTCCTCTCTTTGGCCAACAACACCAACCTCAGACCATGGACCTTCCCCGACTTGATTCAGTCCACAAAAATACAAGAGCTCAATCTTGTTGCTACAAATCTCATGGGCTCTCTACCAGAAATATTTGACTCATTGCCAAGTTTGGAGACTCTTCTGCTCTCCAACAACAGCCTCACCGGTGTCTTGCCTGAGTCTTTTGGAAGACCCAATAAGATTACCACATTGCACCTCAACGACCAGAAGGGCAAAGGATTTTCAGGTACAATGGATGTCCTTTCAAATATGATCGATTTGTCTGAGGCGTGGCTTCAGGGGAACTCCTTTGATGGATATATCCCTGACATGTCTCGTTGTACCGCTTTACAAGATTTACGACTTGCGCACAATCGATTTACAGGTGTCATTCCACATTCTCTGATAAATCTCAGGAACCTGCAAACTGTTACTTTGAACAACAACTTTTTTCAGGGCCCTATGCCTATCTTTTCCGTAATTACCGAGAGTACGAATGTTGGAGATAACACCACCGATGCCTTTTGTCGAGACAACTTTGATCCTTGTGACGAGAGAGTTACCATTTTGCTTGAAATTGCATCTGCATTTGGATATCCTTATTTGTTGGCCAGTTCATGGCGAGGAAATAATCCATGTCATAATTGGAGTTTTGTTGCATGTACTGCGACTATGATTACAACCGTGAATTTGACAAGGCAGAATTTGACAGGAACTATCTCGGGTGCGTTTGGTAAATTAACTCATTTGGAAAACTTGTATCTGAGTGGTAACAATTTAAAAGGTTCAATACCTGAAAACTTGACCACTCTTCATCAGCTCAAGAATCTCGATGTCTCCCACAACAACTTATCAGGAAAAATTCCCCATTTCTCACGTGGAGTATACCTGAATACTGAAGGTAACCCTTTGTTCAAGAGAAATCCACCTGCTTGGATCAAAGGCGCAATAGCAGCAGCAGCAGGTATTGGAGGTCTTGTTTCCTTGGTTATAGTTATTTGTAACCGAAAGAGGTGTCTTAGCTTCTTACAATGGATTTTGTGGAAGAAAACAGGACCATTTATTGATAATGAATTTGAAGAATTTATGAAAATTTATGGATCTTTGATGTTAAGGAGATATAGTTATTCTGAAGTGAAAAGCATGACAAACTCATTTCGTGATAAATTAGGAAGAGGAGGATATGGCATTGTATACAAAGCATGCTTAAGTGATGGTTGTCCAGTAGCAGTGAAGGTGTTGACCGAATCTAGCGGAAGTGGGGAGGAATTCCTGAATGAGGTAGCTAGTATTGGTAGAACTTCTCATATGAATATTGTCTCGCTGTTGGGATTTTGCTATGAAAAATATAAAAGGGCACTCATCTATGAATTCATGCCAAATGGTTCTTTGGATAAGTTTATCTATAAACAAGAATCTCCCAATGCTATTTGTATTTTGGATTGGAATACATTATTTCAAATTACAATTGGTATTGCACGAGGATTAGAATATTTGCACCGAGGATGTGCGACAAAAATTTTGCATCTTGATATTAAACCTCAAAATATTCTGTTAGATGAAGATTTTTGTCCAAAAATTGCTGATTTTGGATTGGCAAAAATATGCAAAAAGAAAGAGAGTATTGTATCTATACAAGGTACAAGAGGAACTCCTGGATACATTGCACCAGAAGTATTTAGCCGAACCTTTGGTAAAGTTTCTCACAAATCTGATGTGTATAGTTATGGAATGTTGATTCTTGAATTGGTGGGAGGTAGAAAGAACTACGACACCGGCGGATCACTTACCAATGAAATGTACTTTCCAGATTGGATTTACAAGGATCTCGAAGAGCAAAATATCCTTGGACGGGGTTTGTCCACTACTGAAGAAGAAAATGATATGATAAAGAAAATTACTTTGGTGAGTTTATGGTGCATTCAAACAAATCCATTGGATAGACCATCAATAAACAAAGTAGTAGAAATGTTAGAAGGACCACTTCAGTCAGTGCCATATCCTCCAAAACCTGTCTTATATTCTCCTCAAATGTCTATCTCACAGTTTTCACGAATCTCCTATAACAGTACAGATGAGGAGGATTCTGAGATTGTTGAGGAGACTATTTCCATCAATAATTCAAAATTTGCAAAATAA 2964 0.4123 MTSVLSDEREAAYMLKLMNALKPPAWSNTKPVCDWIGVACNNQSGRIEQIFINSMSLTGTVPAGLNDSLSQLTYLDLSDNNLSGPVPSLANLSFLQVAYLDNNNFTTIPHGCFHGLTSLRHLSLNNNTNLPPWNFPTDLTAHSSHLHTLDLSSTNLKGSLPPNISHSFPVMEYLYLSNNNLSSIPEGCFHNLTSLTSLQLANNTNLSPWTFPLDLTHSSLQLYHLDLEATNLMGSLPYLSHFFPHLNLVSLSNNNLSSIPEGCFHNLTSLNVLSLANNTNLRPWTFPDLIQSTKIQELNLVATNLMGSLPEIFDSLPSLETLLLSNNSLTGVLPESFGRPNKITTLHLNDQKGKGFSGTMDVLSNMIDLSEAWLQGNSFDGYIPDMSRCTALQDLRLAHNRFTGVIPHSLINLRNLQTVTLNNNFFQGPMPIFSVITESTNVGDNTTDAFCRDNFDPCDERVTILLEIASAFGYPYLLASSWRGNNPCHNWSFVACTATMITTVNLTRQNLTGTISGAFGKLTHLENLYLSGNNLKGSIPENLTTLHQLKNLDVSHNNLSGKIPHFSRGVYLNTEGNPLFKRNPPAWIKGAIAAAAGIGGLVSLVIVICNRKRCLSFLQWILWKKTGPFIDNEFEEFMKIYGSLMLRRYSYSEVKSMTNSFRDKLGRGGYGIVYKACLSDGCPVAVKVLTESSGSGEEFLNEVASIGRTSHMNIVSLLGFCYEKYKRALIYEFMPNGSLDKFIYKQESPNAICILDWNTLFQITIGIARGLEYLHRGCATKILHLDIKPQNILLDEDFCPKIADFGLAKICKKKESIVSIQGTRGTPGYIAPEVFSRTFGKVSHKSDVYSYGMLILELVGGRKNYDTGGSLTNEMYFPDWIYKDLEEQNILGRGLSTTEEENDMIKKITLVSLWCIQTNPLDRPSINKVVEMLEGPLQSVPYPPKPVLYSPQMSISQFSRISYNSTDEEDSEIVEETISINNSKFAK 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03800 987 Pfam Leucine rich repeat 70 127 IPR001611 GO:0005515
Aip04g03800 987 Pfam Leucine rich repeat 294 349 IPR001611 GO:0005515
Aip04g03800 987 Pfam Leucine rich repeat 502 559 IPR001611 GO:0005515
Aip04g03800 987 Pfam Leucine rich repeat 144 203 IPR001611 GO:0005515
Aip04g03800 987 ProSitePatterns Serine/Threonine protein kinases active-site signature. 782 794 IPR008271 GO:0004672|GO:0006468
Aip04g03800 987 SMART serkin_6 659 933 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g03800 987 PANTHER RECEPTOR-LIKE KINASE TMK4 171 256 - -
Aip04g03800 987 PANTHER OSJNBA0070M12.3 PROTEIN 8 182 - -
Aip04g03800 987 Pfam Protein kinase domain 663 931 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g03800 987 SUPERFAMILY L domain-like 459 586 - -
Aip04g03800 987 Gene3D Transferase(Phosphotransferase) domain 1 734 940 - -
Aip04g03800 987 Gene3D Ribonuclease Inhibitor 460 583 IPR032675 -
Aip04g03800 987 SMART LRR_bac_2 546 566 - -
Aip04g03800 987 SMART LRR_bac_2 522 542 - -
Aip04g03800 987 SMART LRR_bac_2 316 336 - -
Aip04g03800 987 SMART LRR_bac_2 243 262 - -
Aip04g03800 987 SMART LRR_bac_2 168 187 - -
Aip04g03800 987 SMART LRR_bac_2 69 89 - -
Aip04g03800 987 PANTHER OSJNBA0070M12.3 PROTEIN 222 934 - -
Aip04g03800 987 SMART LRR_sd22_2 546 574 - -
Aip04g03800 987 SMART LRR_sd22_2 522 545 - -
Aip04g03800 987 SMART LRR_sd22_2 69 94 - -
Aip04g03800 987 SUPERFAMILY L domain-like 333 431 - -
Aip04g03800 987 SUPERFAMILY Protein kinase-like (PK-like) 638 933 IPR011009 -
Aip04g03800 987 ProSiteProfiles Leucine-rich repeat profile. 170 191 IPR001611 GO:0005515
Aip04g03800 987 ProSitePatterns Protein kinases ATP-binding region signature. 665 687 IPR017441 GO:0005524
Aip04g03800 987 PANTHER OSJNBA0070M12.3 PROTEIN 171 256 - -
Aip04g03800 987 SUPERFAMILY L domain-like 30 350 - -
Aip04g03800 987 Pfam Leucine rich repeat N-terminal domain 463 496 IPR013210 -
Aip04g03800 987 Pfam Leucine rich repeat N-terminal domain 10 41 IPR013210 -
Aip04g03800 987 Gene3D Ribonuclease Inhibitor 138 213 IPR032675 -
Aip04g03800 987 Gene3D Ribonuclease Inhibitor 6 137 IPR032675 -
Aip04g03800 987 ProSiteProfiles Leucine-rich repeat profile. 524 547 IPR001611 GO:0005515
Aip04g03800 987 ProSiteProfiles Leucine-rich repeat profile. 71 93 IPR001611 GO:0005515
Aip04g03800 987 PANTHER RECEPTOR-LIKE KINASE TMK4 222 934 - -
Aip04g03800 987 ProSiteProfiles Protein kinase domain profile. 659 948 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g03800 987 CDD STKc_IRAK 665 935 - -
Aip04g03800 987 PANTHER RECEPTOR-LIKE KINASE TMK4 8 182 - -
Aip04g03800 987 ProSiteProfiles Leucine-rich repeat profile. 245 266 IPR001611 GO:0005515
Aip04g03800 987 Gene3D Phosphorylase Kinase; domain 1 632 733 - -
Aip04g03800 987 PRINTS Leucine-rich repeat signature 72 85 - -
Aip04g03800 987 PRINTS Leucine-rich repeat signature 316 329 - -
Aip04g03800 987 Gene3D Ribonuclease Inhibitor 214 453 IPR032675 -
Aip04g03800 987 SMART LRR_typ_2 267 288 IPR003591 -
Aip04g03800 987 SMART LRR_typ_2 92 115 IPR003591 -
Aip04g03800 987 SMART LRR_typ_2 522 546 IPR003591 -
Aip04g03800 987 SMART LRR_typ_2 316 339 IPR003591 -
Aip04g03800 987 SMART LRR_typ_2 192 213 IPR003591 -
Aip04g03800 987 SMART LRR_typ_2 69 91 IPR003591 -
Aip04g03800 987 SMART LRR_typ_2 116 137 IPR003591 -
Aip04g03800 987 SMART LRR_typ_2 168 191 IPR003591 -
Aip04g03800 987 SMART LRR_typ_2 243 266 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03800 Aip-Chr4 132257352 132260542 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03800 645 955 Receptor kinase-like Gene Family AT5G38280 60.000 4.11e-125 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Aip04g03800 Pkinase 3.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03800 - - aip:107635702 1716.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g03800 04 132257352 132260542 Aip04g03800 04 132257352 132260542 ECH