Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03787 ATGGATCCACAACTCACACCCCAAACCCTAAACTCCACCAGTTTATTCCTTGCCGCCACAACAGCCACCACTCATTCCGAACAACCACCACATTCACTCTCCCTCACCACCGTTCCTTCCACCGTACCACGCTCCAAGCTCATCCCGAACACTCGCTTCCTCGTCGACGCCTTCCGCCACGCCGACACAGCATTCTCCGTCTCCTACTTCCTCTCTCACTTCCACTCCGATCACTACACCGGTCTCTCCCATTCTTGGTCCCGCGGCATTGTCTTCTGCTCCGCCACCACCGCCTCCCTCCTCCAACGAATCCTCGGAGTCCCCAAACGCTTCCTTGTACCCCTTCCCCTTTGCCAGCCCGTTGAAATCGACGGCGCGGAGGTCACGCTGGTCGACGCGAACCACTGCCCTGGCGCGGTCCAGTTCCTATTCAAGGTCCCAACAAAAGAAGAAGGGAAGAAATTCGAGAGGTATGTTCACACTGGCGATTTCAGGTTTTGTAATTCAATGATTTTGGAGCCTGCAATTCTTGATTTCGTTGGCTGTGATGCTGTGTTCTTGGATACTACTTATTGCAACCCAAAGTTTGTGTTTCCTTCGCAAGAGGAGAGTGTTGATTATGTGGTTAGTGTAGTCGAGAGGGTTATTAGTGATTGTGGTGGTGATGGTAGTGGTGTTTTGTTTCTTGTTGCTACTTATGTTATTGGGAAGGAAAAGATTTTGGTTGAACTTGCACGGAGAGTGAAGAGGAAGGTGCATGTGGATGCTAGGAAAATGGAGGTTTTGAGGGTGCTTGGGTATGGAGAGAGTGGTGTGTTTACCGAGGACAGTTCAGAGAGTAATATTCATGTTGTTGGCTGGAATGTATTGGGGGAGACATGGCCGTATTTTAAGCCAAATTTCGTTAGGATGAAGGAGATTATGATTGAGAGAGGGTACTCCAAGGTTGTGGGATTTGTGCCAACCGGATGGACTTATGAAGTAAAGGGCAATACGTTCGCAGTGAGGTCCAAGGATTCATTTGAGATTCATCTCGTGCCGTATAGCGAGCATTCCAACTACGAGGAGCTCAGGGAGTATGTGAAGTTTTTGAAGCCAAGGGGTGTTGTTCCGACAGTGGGTTTGGATGTTGAGAAAAGCGACAGTAAGCATGCTGAAAAAATGAGGAAGTATTTTGCTGGATTGGTTGATGAGACGGCCAACAAGCATGAATTTCTAAAGGGATTTCACCGTGCCACAGGCGACACAGATTTCTTGGTTGAGAAGGATGTTAATGATGGTCAGAAGCCAGGAAAAAACATGGAGGAAGGAATCAAGCCATCTGAGTTGGATGGTGAGGAAAGTACAACTCCGTATGTTGCTGCTAGTGTGCCCTCTTCTACTGGGGAACCGTGTACAGAAAGTGTTACTTTACTAACTGATGAAGAAAAAGAGAAAATGATTGAAGAACTTGGTAATTGTTTGCCGGCATGGGTCACTCGAAGCCAAATGTTAGAGCTGATCAGCATCTCAGGGAGCAATGTTGTTGAAGCTGCTTCTAATTTTTATGAACGTGAAACTGAATTTCACAAGCAAGCATTTTCTTGTCAAACTTCTTCGGTGTCCAAGTGCAGCTCACTAAATGACATAGATTCTCCTTCAAAAGCTTGCCTGAATTCGAGCAGCACTACCAAAAATAACGATGTTTTTCCAAGCCAGGACTCTACTAAACTAACTATCTTGAAGCATACAGTTTTAAGTCAAGCTTCCTCTGCCAAAAGGAATAAAATTAGTGGAAGTAAGCCAAACAAGAAAGTAAAAGTCAAAGCAAAGTCACAGTCACAATCAAGTGATCCAAAGCAGTCCACCATAACAAAATTCTTCAGCAAAATGATGTTGGAAATCGGTACAANACCACTTGAGAAATACAATCCTAAAGAGCATGCTTGTTGGAAAGATGGGCAGCCTGCACCATATTTACATCTTGCACGAACCTTCAGCCTTCTGGAGGATGAGAAAGGAAAGATTAAGGCTACTTCAATGTTATGCAATACATTCCGAAGTTTGCTGGCCCTGTCTCCAGCAGATGTGCTGCCTGCTGTGTACCTATGTACAAACAAAATTGCAGCAGACCATGAAAAGATGGAACTAAACATTGGTGGAAGTATAGTTACTGCAGCACTTGAAGAGGCATGCGGAACAAATCGATCCAAAATAAGGGAGATGTATAACAAATTTGGCGATCTTGGTGATGTTGCTCAAGAGTGTCGTCAAACACAGAGATTGCTTGCACCACCAACACCACTTCTGATTAAGGATGTTTTCTCTGCACTGCAAAAGATAAGTTTACAAACAGGCCATGGAAGCACATCTCGGAAGAAAGACATTATCATTCGTCTCATGTGTTCCTGTCGTGAGAAGGAGATTAAATTTCTTGTTCGGACCTTGGTAAACCTCAGATTATATCTTTTTCTTCTTTCCGTTTCTCCTCCCGCTTTTTTGTGTTTATATGTCCTTTCTGTGGAAATTGTTGAAGCATATAACATAATTCCGAATTTGGATCTCATAGTTCCATCTCTCATGAACAAAGGAATTGATTTTTCGGTTTCAAGTTTGTCAATGGTTCCTGGAATTCCTATTAAGCCTATGCTTGCAACGATCACCAATGGCATTCCCAAGGCATTGAACCTATTTCAAAATAAGGCATTTACTTGTGAATATAAGTATGATGGTCAGCGAGCTCAAATTCACAGATTAATTGATGGATCAATTCGTGTTTTTTCAAGAAATGGAGATGAATCAACATCAAGATTTCCTGATCTTATTGACATAATTAAGGAATCCTGCAAGCCTGTTGCTTCGACTTTCATAATTGATGCTGAAGTTGTTGGTATTGATAGAAAAAATGGATTTAGGATTATGTCTTTCCAGGAGCTATCTTCACGTGGTAAAGGAAGCAAAGATACTCTAGTTACTACAGAGAGCATAAAGGTGGATATTTGCATATTTGTCTTTGATATCATGTTTGCAAATGGAGAGCAGCTATTGGGTTTTCCTCTTCGCACAAGACGGAAATATCTAAAGGATTTGTTATGTGATGAAAAACCAGGGTATTTTGAATATGCAAAGGAAATAACAATTGAAGCAGACAAGGCTTGCGAAACTTGTAAAGACACATTAACCAAGATAAACGCTTTCTTGGAAGATGCTCTTCGTTCTTCCTGTGAAGGAATTATGGTGAAAACATTGGATGTAGATGCTGGTTATTCTCCGTCAAAGCGTTCTGATAAATGGTTAAAGGTCAAACGAGATTATGTCGATGGTTTAAATGATACTCTTGATTTGGTGCCAATTGGAGCTTGGCATGGAAATGGAAGGAAGGCCGGATGGTATAGTCCATTTCTCATGGCATGTTATAATCCTGAAACTGAGGAATATCAAAGCGTGTGCCGAGTGATGTCTGGGTTCTCAGATTCGTTTTACATAGAGATGAAAGAATTCTTCTCTGGGGACAAAGTCTTATCCAAAAAGCCGCTGTATTATCGAACAGCAGAGAAGCCCGACATGTGGTTTTGTCCGCAACTTGTTTGGGAGATACGAGGTGCAGAGTTCACGGTGTCCCCTGTTCATCATGCAGCCATCGGTTTAATTCATCTGTCTCGGGGCATCTCAATACGGTTTCCGAGATTTATTAGGCGTGTGTCGGATAGGAACCCAGAAGAGTGTAGTACAGCAGCAGATATTGTTAATTTGTTTCATTCTCAGCCAAGGAAGAAGGATGTCACAGCTGAAGATTGA 3777 0.43 MDPQLTPQTLNSTSLFLAATTATTHSEQPPHSLSLTTVPSTVPRSKLIPNTRFLVDAFRHADTAFSVSYFLSHFHSDHYTGLSHSWSRGIVFCSATTASLLQRILGVPKRFLVPLPLCQPVEIDGAEVTLVDANHCPGAVQFLFKVPTKEEGKKFERYVHTGDFRFCNSMILEPAILDFVGCDAVFLDTTYCNPKFVFPSQEESVDYVVSVVERVISDCGGDGSGVLFLVATYVIGKEKILVELARRVKRKVHVDARKMEVLRVLGYGESGVFTEDSSESNIHVVGWNVLGETWPYFKPNFVRMKEIMIERGYSKVVGFVPTGWTYEVKGNTFAVRSKDSFEIHLVPYSEHSNYEELREYVKFLKPRGVVPTVGLDVEKSDSKHAEKMRKYFAGLVDETANKHEFLKGFHRATGDTDFLVEKDVNDGQKPGKNMEEGIKPSELDGEESTTPYVAASVPSSTGEPCTESVTLLTDEEKEKMIEELGNCLPAWVTRSQMLELISISGSNVVEAASNFYERETEFHKQAFSCQTSSVSKCSSLNDIDSPSKACLNSSSTTKNNDVFPSQDSTKLTILKHTVLSQASSAKRNKISGSKPNKKVKVKAKSQSQSSDPKQSTITKFFSKMMLEIGTXPLEKYNPKEHACWKDGQPAPYLHLARTFSLLEDEKGKIKATSMLCNTFRSLLALSPADVLPAVYLCTNKIAADHEKMELNIGGSIVTAALEEACGTNRSKIREMYNKFGDLGDVAQECRQTQRLLAPPTPLLIKDVFSALQKISLQTGHGSTSRKKDIIIRLMCSCREKEIKFLVRTLVNLRLYLFLLSVSPPAFLCLYVLSVEIVEAYNIIPNLDLIVPSLMNKGIDFSVSSLSMVPGIPIKPMLATITNGIPKALNLFQNKAFTCEYKYDGQRAQIHRLIDGSIRVFSRNGDESTSRFPDLIDIIKESCKPVASTFIIDAEVVGIDRKNGFRIMSFQELSSRGKGSKDTLVTTESIKVDICIFVFDIMFANGEQLLGFPLRTRRKYLKDLLCDEKPGYFEYAKEITIEADKACETCKDTLTKINAFLEDALRSSCEGIMVKTLDVDAGYSPSKRSDKWLKVKRDYVDGLNDTLDLVPIGAWHGNGRKAGWYSPFLMACYNPETEEYQSVCRVMSGFSDSFYIEMKEFFSGDKVLSKKPLYYRTAEKPDMWFCPQLVWEIRGAEFTVSPVHHAAIGLIHLSRGISIRFPRFIRRVSDRNPEECSTAADIVNLFHSQPRKKDVTAED 1258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03787 1258 MobiDBLite consensus disorder prediction 422 443 - -
Aip04g03787 1258 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 899 907 IPR016059 GO:0003909
Aip04g03787 1258 Gene3D - 886 1099 - -
Aip04g03787 1258 SUPERFAMILY Nucleic acid-binding proteins 1104 1248 IPR012340 -
Aip04g03787 1258 ProSiteProfiles ATP-dependent DNA ligase family profile. 986 1133 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Aip04g03787 1258 Pfam ATP dependent DNA ligase domain 875 1095 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Aip04g03787 1258 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 632 858 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Aip04g03787 1258 SUPERFAMILY Metallo-hydrolase/oxidoreductase 49 374 IPR036866 -
Aip04g03787 1258 Pfam DNA repair metallo-beta-lactamase 271 374 IPR011084 -
Aip04g03787 1258 Gene3D - 1100 1257 IPR012340 -
Aip04g03787 1258 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 709 1245 IPR000977 GO:0003910|GO:0005524|GO:0071897
Aip04g03787 1258 CDD Adenylation_DNA_ligase_I_Euk 866 1098 - -
Aip04g03787 1258 CDD SNM1A-1C-like_MBL-fold 30 194 - -
Aip04g03787 1258 Pfam ATP dependent DNA ligase C terminal region 1121 1229 IPR012309 GO:0003910|GO:0006281|GO:0006310
Aip04g03787 1258 MobiDBLite consensus disorder prediction 584 613 - -
Aip04g03787 1258 Gene3D DNA ligase/mRNA capping enzyme 904 1035 - -
Aip04g03787 1258 MobiDBLite consensus disorder prediction 422 460 - -
Aip04g03787 1258 Gene3D - 197 351 - -
Aip04g03787 1258 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 832 1097 - -
Aip04g03787 1258 Gene3D - 630 877 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Aip04g03787 1258 Gene3D - 48 373 IPR036866 -
Aip04g03787 1258 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 7 625 - -
Aip04g03787 1258 CDD OBF_DNA_ligase_I 1104 1247 - -
Aip04g03787 1258 Pfam DNA ligase N terminus 651 809 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Aip04g03787 1258 PANTHER DNA LIGASE 7 625 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03787 Aip-Chr4 132106135 132113265 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03787 487 1248 Core DNA Replication Machinery Family AT1G08130 34.168 1.27e-153 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03787 - - peq:110032291 1402.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g03787 04 132106135 132113265 Aip04g03787 04 132106135 132113265 ECH