Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03784 ATGGAATCGATATCTCCTAATAATATATTGGTACAATGCCGAATATGTCACAATGAAGATGAAGAGTCACACATGGAAACACCATGTTCATGTTCTGGCACCCTCAAGTATGTACATAGAAATTGTGTTCAAAGATGGTGCAATGAGAAAGGCGATACTACCTGTGAGATTTGCCTACAGCAATTTACACCCGGGTACACTGTACCCCCACCACTTATCCATTATGGTGGATCTCCAATAAATTTCGGATGGAACTATTGGGAGACTTCAAGAAGAGTTCACAATAACAACAATCAATTTGTATCAATGTTTGGTGCTGATCATCATGATCTAGAACCTGACATTGAATATTCAACACCCTCTACAAGGTCCATGATATGGTGCCGCATAATTGCCACTATTTTTCTTGGTCTTATTGTTTTAAGGCATACACTTCAAGTTATACTGATACTCAGTGAAACAGAAGAGTATTCATTAACAGTGTTTATGCTATTACTGTTGGGAATCCTTGGGATATTGATTTCAATACATACGATGATCAAAGCTAACTACTATGGCCCAAGGACTTCAACACCAGATTCATCATTCCCCTATTTCATCACGTGA 606 0.3828 MESISPNNILVQCRICHNEDEESHMETPCSCSGTLKYVHRNCVQRWCNEKGDTTCEICLQQFTPGYTVPPPLIHYGGSPINFGWNYWETSRRVHNNNNQFVSMFGADHHDLEPDIEYSTPSTRSMIWCRIIATIFLGLIVLRHTLQVILILSETEEYSLTVFMLLLLGILGILISIHTMIKANYYGPRTSTPDSSFPYFIT 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03784 201 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 5 183 IPR033275 -
Aip04g03784 201 SUPERFAMILY RING/U-box 11 63 - -
Aip04g03784 201 Pfam Protein of unknown function (DUF3675) 64 182 IPR022143 -
Aip04g03784 201 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 5 183 - -
Aip04g03784 201 CDD RING_CH-C4HC3_MARCH 13 58 - -
Aip04g03784 201 Pfam RING-variant domain 13 58 IPR011016 GO:0008270
Aip04g03784 201 SMART ringv_2 12 59 IPR011016 GO:0008270
Aip04g03784 201 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 67 IPR013083 -
Aip04g03784 201 ProSiteProfiles Zinc finger RING-CH-type profile. 5 65 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03784 Aip-Chr4 132092541 132094790 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03784 12 58 C3H Transcription Factor Family AT2G37950 48.000 1.93e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03784 - - gmx:100784696 233.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g03784 04 132092541 132094790 Aip04g03784 04 132092541 132094790 ECH