Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03744 ATGGCCGCTGGTATGGATATGTCCCTTGACGAAGTCATCAAGAAGTCCGCGGCTGAGTCCGCCGCTCGCCGCCGCCCAAGGTATCCTCTCTCAGGCCTTGGTCCCGACCGCCGCATCTCAACATTCAGGGTTTTGGTTGGTTGGAGAAGGGTTGGAAGGCAAATGTTGCAAGGGAGTGTTGTTCCTGGTGTTGGACTGGTTATGGGTCACGGAGCTGGAGTTGGAGCTGAACCTGACACTGAAACCAAACTCTATATTTCTAACTTGGATTATGGTGTTTCCAACGAAGATATTAAGCTGCTGTTTGCAGAAGAGGGCGAGTTAAAGAGATACTCCATACATTATGACAAGAGTGGAAGATCAAAGGGGACAGCAGAAGTTGTCTTTGTGAGGAAGTCTGATGCTCTAGCAGCCATGAAGAAATACAACAACATGAAGCTTGATGGGAAACCATTGCAAATTGAGCTTGTTGGAACTACCGTCGTACCAGCTCCTGATGTTAGACCTGTTGTTCAAAATAGCATATTGGGAAAACCAAGTAACTTCTTTGTATGTGGACAAGGAACGGTCGACGATAGAAGTTTCCAGAATGGCATTTTAGGGGACTACCATCGAACAATCCAGAATGGCATTTTAGGCGACTACCATCGAAGGGGCCTTAGTGACAGGATTGGAGGGAAGATCCCTATTGGAAGGAGGGTGTCTTCTAGAGATCTTGATGATGATTTGGAGAGGTATAACCAACGTCCAAGAGGTGGTCCAAGAAGCAGAGGCCGCAGAGAAACAAGGGACCAAAATAATGGAAAGCTATCTCGTAAAGATCTTGATGACGACTTGGAGCGGTATCGCATGGAGGCTATGCAACTAAAAAAGAAAAATCCAAACTGA 888 0.4673 MAAGMDMSLDEVIKKSAAESAARRRPRYPLSGLGPDRRISTFRVLVGWRRVGRQMLQGSVVPGVGLVMGHGAGVGAEPDTETKLYISNLDYGVSNEDIKLLFAEEGELKRYSIHYDKSGRSKGTAEVVFVRKSDALAAMKKYNNMKLDGKPLQIELVGTTVVPAPDVRPVVQNSILGKPSNFFVCGQGTVDDRSFQNGILGDYHRTIQNGILGDYHRRGLSDRIGGKIPIGRRVSSRDLDDDLERYNQRPRGGPRSRGRRETRDQNNGKLSRKDLDDDLERYRMEAMQLKKKNPN 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03744 295 SMART rrm1_1 83 155 IPR000504 GO:0003723
Aip04g03744 295 PANTHER THO COMPLEX SUBUNIT 4A 5 247 - -
Aip04g03744 295 MobiDBLite consensus disorder prediction 235 279 - -
Aip04g03744 295 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 82 159 IPR000504 GO:0003723
Aip04g03744 295 SUPERFAMILY RNA-binding domain, RBD 75 157 IPR035979 GO:0003676
Aip04g03744 295 Coils Coil 272 295 - -
Aip04g03744 295 Gene3D - 75 158 IPR012677 -
Aip04g03744 295 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 247 - -
Aip04g03744 295 CDD RRM_THOC4 82 156 - -
Aip04g03744 295 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 84 152 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03744 Aip-Chr4 131747765 131749744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03744 84 157 Eukaryotic Initiation Factors Gene Family AT2G23350 37.838 1.55e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03744 K12881 - gmx:100785926 201.445