Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03729 ATGATGAAGAGAGAAAGAGAAGTGATTGAAAGCATGACCATGGCAAATTGCTTGATGCTACTATCTAGAGGAAGTGATCAATTTAGGGCAACATATTCTTCAAGTTTTTCTTCTAATTATAACAACAACGACGACAACAACAGCAACAGAGTGTTCGAGTGCAAAACATGTAACAGACAATTCCCTTCATTTCAAGCACTTGGAGGGCATAGAGCTAGTCACAAGAAGCCAAGGTTGAATGATGATCATGGTGGCAATAACAAAATGGAAGATCAACATCAATTGGAACCTCAAAAGCCTAAGACTCATGAATGTTCCATTTGTGGGTTGGAATTTGCAATTGGTCAAGCATTAGGTGGACATATGAGGAGGCATAGAGCTACTTCAAATTTGAATCATCATAATGGAAGATTATTATTGCATAATAATAACAATAATAATAATAATAATTCTTCTACTATGAGTAGTAGTAGTGGTGGTAGCACTAGCCTTGAGTCAAAGAATAATAGTAAGAGAGTTTTGGTTTTGGATTTGAATTTGACACCCTTTGAGAATGATTTGGAGATTTTGAAGATTGGAAATTGTTTGTATTGA 594 0.3535 MMKREREVIESMTMANCLMLLSRGSDQFRATYSSSFSSNYNNNDDNNSNRVFECKTCNRQFPSFQALGGHRASHKKPRLNDDHGGNNKMEDQHQLEPQKPKTHECSICGLEFAIGQALGGHMRRHRATSNLNHHNGRLLLHNNNNNNNNNSSTMSSSSGGSTSLESKNNSKRVLVLDLNLTPFENDLEILKIGNCLY 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03729 197 Pfam C2H2-type zinc finger 51 77 - -
Aip04g03729 197 Pfam C2H2-type zinc finger 103 127 - -
Aip04g03729 197 PANTHER ZINC FINGER PROTEIN ZAT5 12 188 - -
Aip04g03729 197 MobiDBLite consensus disorder prediction 135 168 - -
Aip04g03729 197 ProSitePatterns Zinc finger C2H2 type domain signature. 54 74 IPR013087 -
Aip04g03729 197 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 79 IPR013087 -
Aip04g03729 197 SUPERFAMILY beta-beta-alpha zinc fingers 50 125 IPR036236 -
Aip04g03729 197 MobiDBLite consensus disorder prediction 67 100 - -
Aip04g03729 197 Gene3D Classic Zinc Finger 27 127 - -
Aip04g03729 197 PANTHER ZINC FINGER PROTEIN ZAT12 12 188 - -
Aip04g03729 197 MobiDBLite consensus disorder prediction 74 100 - -
Aip04g03729 197 SMART c2h2final6 103 125 IPR013087 -
Aip04g03729 197 SMART c2h2final6 52 74 IPR013087 -
Aip04g03729 197 ProSitePatterns Zinc finger C2H2 type domain signature. 105 125 IPR013087 -
Aip04g03729 197 ProSiteProfiles Zinc finger C2H2 type domain profile. 103 130 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03729 Aip-Chr4 131637493 131638364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03729 2 197 C2H2 Transcription Factor Family AT2G28710 40.201 7.23e-37 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip04g03729 zf-C2H2_6 1e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03729 - - adu:107486331 268.855