Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03701 ATGGCAACTTCAAGGACCGTCAAGGATGTTTCGCCTCATGAATTCGTCAAGGCTTATGCCTCCCACCTCAAGCGTTCTGGAAAGATGGAGTTGCCTGAGTGGACAGACATTGTGAAAACTGCAAAGTTTAAGGAATTGGCTCCTTATGATCCTGACTGGTATTATATTAGAGCTGCCTCCATGGCAAGGAAGGTTTATCTGAGAGGTGGCCTTGGTGTTGGTGCTTTTAGGAGGATCTATGGTGGAAGCAAGAGAAATGGAAGCCGTCCCCCGCATTTTTGCAAGAGCAGTGGCGGTATAGCCAGGCACATTCTGCAACAGTTGCAAAAAGTGAACATTATTGAGCTCGATACAAAGGGGGGAAGAAGATTGACTTCTAATGGTCGTAGGGATCTCGATCAAGTTGCCGGCCGCATTGTGATTGCTCCTTGA 432 0.4745 MATSRTVKDVSPHEFVKAYASHLKRSGKMELPEWTDIVKTAKFKELAPYDPDWYYIRAASMARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLQKVNIIELDTKGGRRLTSNGRRDLDQVAGRIVIAP 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03701 143 Pfam Ribosomal protein S19e 6 140 IPR001266 GO:0003735|GO:0005840|GO:0006412
Aip04g03701 143 SUPERFAMILY "Winged helix" DNA-binding domain 6 140 IPR036390 -
Aip04g03701 143 SMART Ribosomal_S19e_2 6 142 IPR001266 GO:0003735|GO:0005840|GO:0006412
Aip04g03701 143 PANTHER 40S RIBOSOMAL PROTEIN S19-1-RELATED 4 141 - -
Aip04g03701 143 Gene3D - 1 142 IPR036388 -
Aip04g03701 143 ProSitePatterns Ribosomal protein S19e signature. 90 109 IPR018277 GO:0003735|GO:0005840|GO:0006412
Aip04g03701 143 PANTHER 40S RIBOSOMAL PROTEIN S19 4 141 IPR001266 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03701 Aip-Chr4 131437529 131439395 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03701 1 143 Cytoplasmic Ribosomal Protein Gene Family AT3G02080 88.112 1.82e-95 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03701 K02966 - gmx:100499800 276.944