Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03700 ATGGATTATTCTTCTTCGTTATCTTCTCTGAGCTTTCATTTCAATAGCTTCAGAGCTTCAGCGAACTCGTTCCTCTCACAATACGAACCTCTTCTTCTGCTTCTCGCTCCTCTCTTCTCTCTCATCCTCGCACACTTGCTTCGCTCATTTTTCAATCTCATCCATGAAAGAGGCCTCAAAGCTTCGCTCCTAGGGTTTCTTATGAGCTCTGTCAAATTGATCCCTGGAGTGAAGAGTTACATTGATAGAGAAAAGCAGAAGGTTGTGGATAAAATGCAGTCTGATGGTAAATCTAAAAGAGAAGGTTGGAGAACAGAGTTGCCAAGCACAGGACTAGGCACTTTAGTACTTGAGAAAATGAAAGAGGAGAAAAGAAAAGATGTGGCTTGGCAAGGCAAATGCTCTGGTACAGTCTACATTGGTGGAAGTGAAATTGATGGACATTTTTCTCTGATAAATGAAGCATGCTCAATGTTTGCACATACCAATCCCTTGCATTTGGATGTATTCCAGAGTGTTGGACGCTTTGAGGCAGAAGTGGTTGCAATGACTGCAGCACTTCTTGGAAGTCAGGAAAAAAGTTCTGGAGGACAAGTATGTGGCAATATGACATCAGGAGGGACTGAAAGTATATTATTAGCGGTCAAATCATCTCGTGATTATATGAAATCTAAGAAAGGAATTACAAGACCTGAAATGATAATTCCTGTGTCTGCACACTCAGCATATGACAAGGCTGCACAGTATTTCAATATCAAACTATGGCGTGTTCCAGTTAACAAAGACTTCCAAGCGGATGTAAAAGCAATTCGACGCCATATTAACAAAAATACCATCTTGATTGTTGGATCCGCTCCAGGGTTTCCTCATGGAATAATTGACCCTATTGAAGAACTTGGTCAGTTGGCATCAAGCTTTGGTATTTGTCTCCATGTAGACCTTTGCCTGGGTGGCTTTGTATTGCCTTTTGCCCGTGAGCTTGGGTACCCTATACCACCTTTTGATTTTTCTGTTAAAGGAGTATCTTCAATATCAGTGGACGTGCATAAATATGGTTTAGCTCCCAAAGGAACAAGTATAGTCCTGTATAGAGACCATGAAATCAGAAAGGTAAGTCATTGGCCTGTTACCGAGTGGAGTGGTGGGTTGTATGTGTCTCCAACCATAGCTGGAAGCAGGCCTGGGGTTCTTAATTCATGGTATATGGCAAATCAATGGTCATTTTGTTCTACAGGTTACTTGGAAAACACGAAAACAATTATGGAAGCAACAAAAAGAATACAGAAAGGCATAGAAGAAATTTCTGAGTTGTATGTTGTTGGAAGACCCGACATGACCATTGTGGCTTTTGGATCTAATGTCCTGGACATATTTGAAGTCAATGATTTGATGACATCCAAAGGGTGGCATTTGAATGCTTTGCAGAGACCCAACAGGTTGGACTGGGATGGGGGAGCTAGCTCACTGAGCTAG 1473 0.4175 MDYSSSLSSLSFHFNSFRASANSFLSQYEPLLLLLAPLFSLILAHLLRSFFNLIHERGLKASLLGFLMSSVKLIPGVKSYIDREKQKVVDKMQSDGKSKREGWRTELPSTGLGTLVLEKMKEEKRKDVAWQGKCSGTVYIGGSEIDGHFSLINEACSMFAHTNPLHLDVFQSVGRFEAEVVAMTAALLGSQEKSSGGQVCGNMTSGGTESILLAVKSSRDYMKSKKGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVNKDFQADVKAIRRHINKNTILIVGSAPGFPHGIIDPIEELGQLASSFGICLHVDLCLGGFVLPFARELGYPIPPFDFSVKGVSSISVDVHKYGLAPKGTSIVLYRDHEIRKVSHWPVTEWSGGLYVSPTIAGSRPGVLNSWYMANQWSFCSTGYLENTKTIMEATKRIQKGIEEISELYVVGRPDMTIVAFGSNVLDIFEVNDLMTSKGWHLNALQRPNRLDWDGGASSLS 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03700 490 Pfam Pyridoxal-dependent decarboxylase conserved domain 175 368 IPR002129 GO:0016830|GO:0019752|GO:0030170
Aip04g03700 490 PANTHER SPHINGOSINE-1-PHOSPHATE LYASE 1 25 479 - -
Aip04g03700 490 Gene3D Aspartate Aminotransferase, domain 1 114 480 IPR015422 GO:0003824
Aip04g03700 490 SUPERFAMILY PLP-dependent transferases 84 480 IPR015424 -
Aip04g03700 490 Gene3D - 142 409 IPR015421 GO:0003824
Aip04g03700 490 PANTHER - 25 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03700 Aip-Chr4 131430590 131436524 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03700 161 477 Calmodulin-binding Proteins AT3G17760 25.872 2.26e-17 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03700 K01634 - gmx:100794395 779.245