Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03643 ATGGCATTCCTTCCACAACCACGTGAATCAGCAGAACCCGAAGATTGCGAAGAAACCATTGTCACAACCGCAACAGCGGCAACTACAGCTAGAGCAATAGCAGCAGCAGAAGAAGATAACGGAACCATCGACGTTCATACAACAAGAGGCGCAACCATAAGGTACCTTCCATTGGATCATCTCTACTCTGCCACGTCACCCTGCAGTGGCTCCTCCAACGTCATGTCCAAGAAAGTTAAGGCTCGCAAGCTCACACCGCATTTTCACCAAAACGACGACGTTAGCGCCAAAACGACGAACTGCAACAACAACGGTGATGATGATGCTGAGAATGTTTCTACTGATAGTTCTGTTGTTGCTGTCCCGCCGAATGATGTTGACAGCAATGATGATAAGCCACCGCTAATTTTTGTTTACTCTCGGCGGCGAAAGAGGGGTGGTTCTGATTCTACTACTGCGTCGTTTTACAATTCACTATCGGGTCGGGCTGGGAAGGACCCGGCGGAAAGGGTGGCTGCGAAGAAGAGGAAGATTGGGACCACCGAGCTGGAGAAATTGGGAGTGGATTTGGGCGCGTTGGGAGTGCTTGACAACGGGCCTAGATTGAGAGAATGCCGCATTAGTAATAACGATGGTGGTGGTGGTGGCGTTTCAGTGGAGAAGTTGGTATCTGAATCTCGTACAGTGAAGAGATGGGTTGGGTTGAGTTTTGATAATGCTGACCCTGAGGCGTTCATTGGGTTGCGATGCAAGGTGTTTTGGCCAATGGATATAAAATGGTACGCTGGCCATGTCAAAGGTTATGATATCGAAACTAAGATACACCATGTTAAATATGATGATGGCGAGGAAGAAAATTTAATTCTTTCAAATGAAAATGTGAAATTTCATATCTCCCGCGAGGAGATGAAGCGCTTGAATTTGAGTTATGGCAAAGTTCGTGACAGTAATGTCTCTGATTGTGATGTTGAAGAGATGCTTGCGATGGCTGCAAGTTTGAATGATTGTCAACAATTTGAACCTGGAGACATCGTATGGGCTAAGCTAACAGGCCATGCAATGTGGCCAGCTGTTGTTCTGGATGAATCACTTGCACGCAAGTGCAAGGGTTTGAATACATTGGGAGGAAACTCAGTTCCTGTCCAGTTTTTTGGCACCCATGACTTTGCAAGGGTTAGACTGCAGCAGGTGAAATCGTTCCTAAGTGGACTTCTTACTGAACTATACACAAAGTGCAACAAAACCAGTTTCTTTGACAGTATGGAAGAGGCAAAGAGGTATTTAAATGAACAGAAACTTCCCTCAGAGATGCTAGCGTTGCAAAAAGGATGTACAGCTGATGACCGTAAAAATGTAACTGGAGAGGATGGACAGTGTACAGATTCAGGAGAAGATTCTTTGAGTGACAAAGAGCCTTCCATAGCACTGGAAAACATTAAATTTCCCTTAGAAGTAGGAGACCTACAAATTATAAGCCTTGGGAAAGTAGTTGAAGATTCTTCATCTTTCTGTGATGGAAAATCCATCTGGCCTGAAGGGTACACTGCAGTGAGGAAGTTTACTTCAGTCACTGATGCTAAAGTATCTGCTGCTTATAAAATGGAGGTCCTGAGAGATCCAGAGTCCAAAGAACGACCTCTATTTAGAGTGACAGTTGATGGTGGTGAGCAGTTCAACAATCATACACCATCAGCTTGCTGGACCCAAATATACCAAAGGATAAATAAATTAGAAAGGGATGGTTCTGAAGCTTCTGTTGCGGAAGATAGGGTAGAAAGCGGATATGAATCTGGGACTGATATGTTTGGTTTCTCCAATCCTGAAGTGGCTAAACTAATACAGGGATTATCCAAATCCAAAGTTTCTTCAAAGAAATCAAGTTTGAAGTTAGGTTCCAGAAGATATAATGACCTACCTGTTGGTTATAGGCCGGTTCATATTAATTGGTTTGATCTTGATAAGTGCAATGTCTGCCACATGGATGAGGAGTACGAGACCAATCTGTTTCTGCAGTGTGACAAATGCAGGATGATGGTGCATGCTAGATGCTATGGAGAACTGGAATCTGTTAATGGAGTGCTATGGTTGTGCAACTTATGTCGATCGGGTGATCCTCCACCACCTTGTTGCTTATGTCCACTAATAGGAGGGGCAATGAAGCCTACAACAGATGGCCGATGGGCACATTTGGCTTGTGCTATGTGGATACCTGAGACTTGCTTAGCTGATGTCAAAAAGATGGAACCTATTGATGGTTTGAACAGAATCAGTAAGGACCGCTGGAAGTTGTTATGTAGCATATGTGGTGTATCTTATGGTGCTTGCATCCAATGTTCAAACAATTCTTGCCGAGTAGCATATCATCCACTTTGTGCTCGTGCTGCTGGTCTTTGTGTTGAGCTTGAGAATGAGGACAGGCTCTATCTACTTTCTGTTGATGATGATGAAGAGCAGTGCATTCGACTGCTTTCTTTTTGCAAGAAACATAGGCAGCCATCTAATGAACATTCTGTTGCCAATGAACGAATTGTTCGAGCTGCGGGTCCATGTTCTGACTATGAACCACCACCCAACCCATCTGGATGTGCTCGAAGTGAACCATATGATTATTTTGGCAGGAGAGGACGGAAAGAACCTGAAGTTCTTGCAGCTGCATCGTCAAAACGTTTGTTTGTTGAGAACCAACCATACCTAGTAGGTGGGTACTGCCAGCATGGGTTGTCTAATGAGCTAGAACCTTCTGGCAGAGGAGTCTTCCCCCAAGTACATAGGCTGAGGACCTCTTTGGGTGATGATTCGGGTGACATACTTTCTATTTCAGAGAAATACAAGTACATGAGGAAAACTTTTCGCAAACGGCTAGCATTTGGGAAATCAAGAATTCATGGATTTGGCATATTTGCAAAGCATCCATATAAAGGTGGAGACATGGTGATTGAATACACTGGTGAACTTGTTAGGCCTCCCATAGCTGACCGGAGAGAGCGCTTCATATACAATTCTTTGGTGGGTGCTGGAACATACATGTTCCGGGTTAATGATGAACGAGTCATTGATGCCACTAGAGCAGGAAGCATAGCTCATTTAATTAATCATTCTTGTGCACCGAATTGCTATTCGCGAGTTATTAATGCTAATGGGGATGAGCATATTATAATATTTGCAAAGAGGGACATTAAACAATGGGAAGAGCTTACATATGATTATAGATTTTTCTCAATTGATGAGCGGCTTTCTTGTTACTGTGGTTTCCCAAAATGCCGAGGTATAGTTAACGATACTGAGGCAGAAGAGCGAGCTACTGCTCTGTATGCACCTCGGAACGAGTTGATAGATTGGAGAGGAGAATGA 3351 0.4396 MAFLPQPRESAEPEDCEETIVTTATAATTARAIAAAEEDNGTIDVHTTRGATIRYLPLDHLYSATSPCSGSSNVMSKKVKARKLTPHFHQNDDVSAKTTNCNNNGDDDAENVSTDSSVVAVPPNDVDSNDDKPPLIFVYSRRRKRGGSDSTTASFYNSLSGRAGKDPAERVAAKKRKIGTTELEKLGVDLGALGVLDNGPRLRECRISNNDGGGGGVSVEKLVSESRTVKRWVGLSFDNADPEAFIGLRCKVFWPMDIKWYAGHVKGYDIETKIHHVKYDDGEEENLILSNENVKFHISREEMKRLNLSYGKVRDSNVSDCDVEEMLAMAASLNDCQQFEPGDIVWAKLTGHAMWPAVVLDESLARKCKGLNTLGGNSVPVQFFGTHDFARVRLQQVKSFLSGLLTELYTKCNKTSFFDSMEEAKRYLNEQKLPSEMLALQKGCTADDRKNVTGEDGQCTDSGEDSLSDKEPSIALENIKFPLEVGDLQIISLGKVVEDSSSFCDGKSIWPEGYTAVRKFTSVTDAKVSAAYKMEVLRDPESKERPLFRVTVDGGEQFNNHTPSACWTQIYQRINKLERDGSEASVAEDRVESGYESGTDMFGFSNPEVAKLIQGLSKSKVSSKKSSLKLGSRRYNDLPVGYRPVHINWFDLDKCNVCHMDEEYETNLFLQCDKCRMMVHARCYGELESVNGVLWLCNLCRSGDPPPPCCLCPLIGGAMKPTTDGRWAHLACAMWIPETCLADVKKMEPIDGLNRISKDRWKLLCSICGVSYGACIQCSNNSCRVAYHPLCARAAGLCVELENEDRLYLLSVDDDEEQCIRLLSFCKKHRQPSNEHSVANERIVRAAGPCSDYEPPPNPSGCARSEPYDYFGRRGRKEPEVLAAASSKRLFVENQPYLVGGYCQHGLSNELEPSGRGVFPQVHRLRTSLGDDSGDILSISEKYKYMRKTFRKRLAFGKSRIHGFGIFAKHPYKGGDMVIEYTGELVRPPIADRRERFIYNSLVGAGTYMFRVNDERVIDATRAGSIAHLINHSCAPNCYSRVINANGDEHIIIFAKRDIKQWEELTYDYRFFSIDERLSCYCGFPKCRGIVNDTEAEERATALYAPRNELIDWRGE 1116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03643 1116 ProSiteProfiles Post-SET domain profile. 1076 1092 IPR003616 -
Aip04g03643 1116 CDD PHD_ATX1_2_like 654 700 IPR042010 -
Aip04g03643 1116 MobiDBLite consensus disorder prediction 449 469 - -
Aip04g03643 1116 SUPERFAMILY FYVE/PHD zinc finger 646 716 IPR011011 -
Aip04g03643 1116 Gene3D SET domain 938 1105 IPR046341 -
Aip04g03643 1116 Gene3D - 481 618 - -
Aip04g03643 1116 Pfam PHD-zinc-finger like domain 708 829 - -
Aip04g03643 1116 SUPERFAMILY Tudor/PWWP/MBT 335 434 - -
Aip04g03643 1116 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 619 699 IPR013083 -
Aip04g03643 1116 Gene3D - 245 295 - -
Aip04g03643 1116 ProSiteProfiles Zinc finger PHD-type profile. 652 703 IPR019787 -
Aip04g03643 1116 ProSiteProfiles FYR domain FYRN motif profile. 480 539 IPR003888 GO:0005634
Aip04g03643 1116 SMART fyrc_3 547 641 IPR003889 GO:0005634
Aip04g03643 1116 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 700 832 IPR013083 -
Aip04g03643 1116 SMART PWWP_4 339 401 IPR000313 -
Aip04g03643 1116 ProSiteProfiles SET domain profile. 952 1070 IPR001214 GO:0005515
Aip04g03643 1116 CDD SET_SETD1-like 940 1088 - -
Aip04g03643 1116 Pfam SET domain 963 1069 IPR001214 GO:0005515
Aip04g03643 1116 MobiDBLite consensus disorder prediction 84 134 - -
Aip04g03643 1116 PANTHER PHD FINGER PROTEINS 37 1113 - -
Aip04g03643 1116 MobiDBLite consensus disorder prediction 91 123 - -
Aip04g03643 1116 SUPERFAMILY Tudor/PWWP/MBT 244 287 - -
Aip04g03643 1116 Pfam PHD-finger 666 701 - -
Aip04g03643 1116 ProSiteProfiles FYR domain FYRC motif profile. 543 629 IPR003889 GO:0005634
Aip04g03643 1116 Gene3D - 328 438 - -
Aip04g03643 1116 Pfam F/Y rich C-terminus 545 620 IPR003889 GO:0005634
Aip04g03643 1116 SMART set_7 952 1076 IPR001214 GO:0005515
Aip04g03643 1116 CDD ePHD_ATX1_2_like 715 829 IPR041956 -
Aip04g03643 1116 SMART fyrn_3 495 539 IPR003888 GO:0005634
Aip04g03643 1116 Pfam PWWP domain 342 428 IPR000313 -
Aip04g03643 1116 ProSitePatterns Zinc finger PHD-type signature. 655 700 IPR019786 -
Aip04g03643 1116 Pfam F/Y-rich N-terminus 486 536 IPR003888 GO:0005634
Aip04g03643 1116 ProSiteProfiles Extended PHD (ePHD) domain profile. 706 830 IPR034732 -
Aip04g03643 1116 ProSiteProfiles PWWP domain profile. 341 403 IPR000313 -
Aip04g03643 1116 SUPERFAMILY SET domain 948 1089 IPR046341 -
Aip04g03643 1116 SMART PHD_3 654 701 IPR001965 -
Aip04g03643 1116 SMART PHD_3 764 830 IPR001965 -
Aip04g03643 1116 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX2 37 1113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03643 Aip-Chr4 130890841 130899901 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03643 655 800 C2H2 Transcription Factor Family AT3G14740 40.397 1.44e-27 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Aip04g03643 zf-HC5HC2H_2 7.2e-33 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03643 - - gmx:100808923 1674.83