Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03636 ATGCAATTTGCAAAGCTAGATGACTCTCCTATGTTCCGGAAGCAGATACAATGCATGGAGGAAAGTGCTGAATCTTTGAGAGAGAGAAGTTTAAAATTTTACAAAGGATGTAGAAAATATACTGAAGGACTTGGGGAGGCATATGACGGAGACATTGCATTTGCAAGTGCCCTTGAAACTTTTGGCGGTGGGCATAATGATCCCATCAGTGTGGCTTTCGGAGGCCCTGTTATGACCAAATTCACTATAGCCTTACGAGAAATTGGGACATACAAAGAGGTCCTTCGATCACAGGTTGAGCATATGTTAAATGACAGATTGCTCCAGTTTGTCAACATGGATTTGCAAGAGGTCAAGGAAGCACGGAAACGCTTTGACAAGGCTAGCCTTATTTATGACCAGACTCGTGAAAGGTTTCTGTCACTGAGAAAAGGCACAAAAAGTGAAGTAGCTAATGCCCTAGAAGAGGAGCTTCATAATGCAAGATCTACATTTGAGCAAGCTCGGTTTAATCTGGTTACTGCCTTGTCAAATGTTGAAGCCAAGAAGAGGTTTGAATTTTTGGAAGCAGTTAGTGGGACAATGGATGCACATCTTCGTTACTTCAAACAGGTCTTGACTTATGCTCAACAGTCAAGAGAAAGGTCCAATTATGAGCAGGCAGCTCTCAATGAAAGAATGCAAGAATACAAACGGCAGATTGACCGAGAGAGTAGATGGGCTTCAAACGGTTCTAGTGGATCTCCTAATGGAGATGGCATACAAGCCATTGGTAGAAGTTCACATAAGATGATAGAGGCAGTTATGCAATCTGCTGCAAAGGGAAAGGTCCAAACTATTCGACAGGGTTATCTCTCAAAACGATCGTCAAACTTAAGGGGAGATTGGAAGAGGAGGTTTTTTGTTCTTGATAGTCGGGGAATGCTGTATTACTACCGTAAACAAGTCAGCAAGTCATCGGGATCTAGCAGTCAACATTCTGGTCAAAGGAATAGTTCTGAGCTTGGATCTGGACTTTTAAGTCGATGGTTGTCTTCTCATCATCATGGTGGAGTACATGATGAGAAATCTGTTGCTCATCATACTGTGAACCTTCTTACATCTACAATCAAAGTTGATGCTGACCAATCAGATTTGAGGTTTTGCTTCCGGATCATCTCACCAACAAAGAACTACACTTTGCAGGCAGAGAGCGCACTGGACCAAATGGATTGGATTGAAAAGATCACAGGTGTTATTGCCTCATTGTTGAGTTCTCAGATTCCTGAAAGGTTATTACCTGCAAGTCCAATGGGAAGTGCTCATAACAGGTCTACCAGTGAGAGTAGTTCTTTTGAAAGTTCAGATTTCGATCACACAGCTATTGAAGAATTTGCAGCAGAGAGAAATCCTGCTACAGCAAATGTGGACCGCAACTCGAGAAGTTTGCAGCTGCAGCGATCCGGTATTAAAACTGAGAAGCCTATTGATGTGTTGCGAAAAGTGTGTGGGAATGATAGATGTGCTGATTGTGGTGCCCCTGAACCTGATTGGGCATCACTAAATCTTGGTGTTCTTGTTTGCATCGAGTGCTCTGGTGTTCATCGAAATCTTGGTGTACACATATCAAAGGTCAGGTCACTTACGCTGGATGTTAAAGTGTGGGAACCTTCTGTAATAAGTTTGTTTCAGTCTCTGGGGAATACTTTTGCCAACTCTGTCTGGGAGGAACTATTGCAATCGAGAAGTGGCTTTCAGGTTGATCTTGTTTCTACAGGGTTAAGCAGGCCTGATAAATCACTAGCACTTTTCGTCAGCAAACCTTCTCAATCCGAGTCTCTATCTGTTAAGGAAAAGTTTATCAATGCAAAGTACGCAGAGAAGCTTTTTGTTCGCAAGCCAAAGGACAGCCAATACCGTCTACTGGTGGCGCAACAGATATGGGAAGCAGTTCGTGCTAATGACAAAAAAACCGTGTATCGATACATTGTTAATTCTGACATTGATGTCAATGCTGCTTATGAACAAATGTGTAGCAGCTCTTTAACCCTTGCTAAAGTGATGCTATTACAAGAGCAAACAAACCATGATCACGGCTCTATATCGAGAAACACATTGGACTGGTCCTCTGCTAGCTCTTTGAACGCAGGCTCTAAAGAAGGACGTGCCGTTGACAACCTAGATGGGTCTACCCTGCTTCATCTTGCTTGTGAAACTGCAGATATTGGCATGCTGGAGCTCCTTCTACAGTATGGTGCAAATGTAAATGCAACCGATTCGAGAGGTCAAACGCCATTACATCGCTGTATTCTCAAAGGCAAATCTACATTTGCAAGATTACTTCTTTCAAGGGGAGCTGATCCTCAAGCTGTAGATGATGAGGGAAGAACCCCTATTGAGCTCGCTGCGGAGTCAAATGCCGATGACAGACAAGTCCATGCTCCATCCACCGATTCTAATGGATGA 2445 0.4315 MQFAKLDDSPMFRKQIQCMEESAESLRERSLKFYKGCRKYTEGLGEAYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQFVNMDLQEVKEARKRFDKASLIYDQTRERFLSLRKGTKSEVANALEEELHNARSTFEQARFNLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESRWASNGSSGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQVSKSSGSSSQHSGQRNSSELGSGLLSRWLSSHHHGGVHDEKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQIPERLLPASPMGSAHNRSTSESSSFESSDFDHTAIEEFAAERNPATANVDRNSRSLQLQRSGIKTEKPIDVLRKVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVISLFQSLGNTFANSVWEELLQSRSGFQVDLVSTGLSRPDKSLALFVSKPSQSESLSVKEKFINAKYAEKLFVRKPKDSQYRLLVAQQIWEAVRANDKKTVYRYIVNSDIDVNAAYEQMCSSSLTLAKVMLLQEQTNHDHGSISRNTLDWSSASSLNAGSKEGRAVDNLDGSTLLHLACETADIGMLELLLQYGANVNATDSRGQTPLHRCILKGKSTFARLLLSRGADPQAVDDEGRTPIELAAESNADDRQVHAPSTDSNG 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03636 814 Pfam BAR domain of APPL family 6 217 - -
Aip04g03636 814 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD1 1 807 - -
Aip04g03636 814 CDD BAR_SFC_plant 14 211 IPR035670 -
Aip04g03636 814 MobiDBLite consensus disorder prediction 780 814 - -
Aip04g03636 814 Gene3D - 271 423 IPR011993 -
Aip04g03636 814 SUPERFAMILY ArfGap/RecO-like zinc finger 485 626 IPR037278 -
Aip04g03636 814 Coils Coil 151 171 - -
Aip04g03636 814 Gene3D - 631 803 IPR036770 -
Aip04g03636 814 PANTHER CENTAURIN/ARF 1 807 IPR045258 GO:0005096
Aip04g03636 814 MobiDBLite consensus disorder prediction 239 255 - -
Aip04g03636 814 Gene3D Arfaptin homology (AH) domain/BAR domain 4 237 IPR027267 -
Aip04g03636 814 SMART 5bar 11 218 IPR004148 GO:0005515|GO:0005737
Aip04g03636 814 Pfam Ankyrin repeats (many copies) 741 795 IPR002110 GO:0005515
Aip04g03636 814 SUPERFAMILY Ankyrin repeat 643 800 IPR036770 -
Aip04g03636 814 Pfam Putative GTPase activating protein for Arf 489 626 IPR001164 GO:0005096
Aip04g03636 814 SMART PH_update 279 416 IPR001849 -
Aip04g03636 814 ProSiteProfiles Ankyrin repeat profile. 754 786 IPR002110 GO:0005515
Aip04g03636 814 SMART ANK_2a 721 750 IPR002110 GO:0005515
Aip04g03636 814 SMART ANK_2a 754 783 IPR002110 GO:0005515
Aip04g03636 814 MobiDBLite consensus disorder prediction 432 446 - -
Aip04g03636 814 CDD PH_ACAP 281 418 - -
Aip04g03636 814 ProSiteProfiles Ankyrin repeat profile. 721 753 IPR002110 GO:0005515
Aip04g03636 814 MobiDBLite consensus disorder prediction 427 446 - -
Aip04g03636 814 ProSiteProfiles Ankyrin repeat region circular profile. 721 752 - -
Aip04g03636 814 SMART arf_gap_3 486 631 IPR001164 GO:0005096
Aip04g03636 814 Gene3D Arf GTPase activating protein 467 630 IPR038508 -
Aip04g03636 814 ProSiteProfiles Ankyrin repeat region circular profile. 754 786 - -
Aip04g03636 814 CDD ArfGap 489 618 - -
Aip04g03636 814 ProSiteProfiles ARF GTPase-activating proteins domain profile. 486 631 IPR001164 GO:0005096
Aip04g03636 814 ProSiteProfiles PH domain profile. 278 414 IPR001849 -
Aip04g03636 814 Coils Coil 213 233 - -
Aip04g03636 814 Pfam PH domain 280 413 IPR001849 -
Aip04g03636 814 PRINTS HIV Rev interacting protein signature 517 534 IPR001164 GO:0005096
Aip04g03636 814 PRINTS HIV Rev interacting protein signature 498 517 IPR001164 GO:0005096
Aip04g03636 814 PRINTS HIV Rev interacting protein signature 540 561 IPR001164 GO:0005096
Aip04g03636 814 SUPERFAMILY BAR/IMD domain-like 6 301 IPR027267 -
Aip04g03636 814 MobiDBLite consensus disorder prediction 234 256 - -
Aip04g03636 814 SUPERFAMILY PH domain-like 279 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03636 Aip-Chr4 130803655 130810766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03636 498 625 C2H2 Transcription Factor Family AT4G21160 40.310 9.51e-21 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03636 K12489 - gmx:100789134 1396.72