Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03633 ATGGATCCAAGAAGGCATGGGAAGCTACCATTATCTTCATCATCAGATGCAAAAGAGAAGAGAGAGGATGATGATTATGGATCTTCTTGGTGCACACCTGAAGACACTGACATGTCAACCATGGTTTCAGCTCTTGCTCAAGTTATGGCAACTTCCAATAATAATAATAATCAAAACCCTCATCACATGATGATGATGCCACAATCAAACCCTTTTCCTCTCTCAAATGAACCTCTTCAACCTACTCACCCTCTTCAAGATCAAGAGGAGGGGTCAAATAAGAAGAAGCCACACTACAGAGGAGTGAGACAGAGGCCATGGGGAAAATGGGCAGCAGAAATTAGAGATCCAAACAAAGCAGCAAGAGTCTGGCTTGGAACCTTTGACACTGCTGAAGATGCTGCTTTAGCTTATGACAAAGCTGCTCTCAAATTCAAAGGCAACAAAGCCAAGCTCAATTTCCCTCAAAAACTTGTTCAACCAAACACTACTCAACAACAACAACCTAATAACAACAACATGCTACAACAACAACAACTACAAGGTGGTTCTGCCTTTCAATTCAGTGGTTCAGCTTCTAATGCTATTCTTCCTACGCTCTATTCACCATCATCATCATTATCCTCAACACATGATCATCAAGTTTTCCCAAACTTGTTTCAGTATGCACAGATTCTTTCAAGTGATGAAGCAAATTTTCCTTATTACACTTCACATCTTTTCAATCAACAACAGCAACAACAGCAGCAACAATTGCAACAATCTTTGAATCCATCGTCCTATTTCTACAACCAACAACAACAACATGATCATGAAGGAGGACACCATCACCACCAAGATTAG 843 0.4045 MDPRRHGKLPLSSSSDAKEKREDDDYGSSWCTPEDTDMSTMVSALAQVMATSNNNNNQNPHHMMMMPQSNPFPLSNEPLQPTHPLQDQEEGSNKKKPHYRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEDAALAYDKAALKFKGNKAKLNFPQKLVQPNTTQQQQPNNNNMLQQQQLQGGSAFQFSGSASNAILPTLYSPSSSLSSTHDHQVFPNLFQYAQILSSDEANFPYYTSHLFNQQQQQQQQQLQQSLNPSSYFYNQQQQHDHEGGHHHHQD 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03633 280 MobiDBLite consensus disorder prediction 1 35 - -
Aip04g03633 280 SMART rav1_2 98 161 IPR001471 GO:0003700|GO:0006355
Aip04g03633 280 PRINTS Ethylene responsive element binding protein signature 99 110 IPR001471 GO:0003700|GO:0006355
Aip04g03633 280 PRINTS Ethylene responsive element binding protein signature 121 137 IPR001471 GO:0003700|GO:0006355
Aip04g03633 280 ProSiteProfiles AP2/ERF domain profile. 98 155 IPR001471 GO:0003700|GO:0006355
Aip04g03633 280 MobiDBLite consensus disorder prediction 1 28 - -
Aip04g03633 280 CDD AP2 97 155 IPR001471 GO:0003700|GO:0006355
Aip04g03633 280 Pfam AP2 domain 97 147 IPR001471 GO:0003700|GO:0006355
Aip04g03633 280 PANTHER DNA-BINDING DOMAIN 50 271 IPR044808 GO:0003700|GO:0009873
Aip04g03633 280 SUPERFAMILY DNA-binding domain 98 156 IPR016177 GO:0003677
Aip04g03633 280 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 50 271 - -
Aip04g03633 280 MobiDBLite consensus disorder prediction 52 104 - -
Aip04g03633 280 MobiDBLite consensus disorder prediction 52 87 - -
Aip04g03633 280 Gene3D AP2/ERF domain 98 157 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03633 Aip-Chr4 130766793 130770542 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03633 37 158 AP2-EREBP Transcription Factor Family AT5G61890 56.250 6.75e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Aip04g03633 AP2 3.9e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03633 - - gmx:100796624 223.402