Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03532 ATGGCTTCTTCTTCTTTTTTATTGGATGCTCCCAGCATCAAACATGATGTCTTCATCAGCTTTAGAGGAGAAGACATCCGCACTTCTTTTCTTAGCCATTTGAGAAAAGAATTGCATCGTAACCATATCGATTTCTTCGTAGACGATGAGAAACTGCACCCTGGAGATGACATTTCATCCACgcttattcaagccattgaagagtcttctatttctttggtcatcttttcggaaaactatgctgcttcaacttggtccttgaatgaactcgagaaagtaattcaatgcatgaaacgagataaaaggattgtgatacctgttttctacaacgttgttccctctgatgtgcggcatcagaataattcctttaaggaggcttttgataaacaccaacacagattgaagggaaatatgatgaaggtgcaaagttggagattggctttaaaggaagcttctaatttatctggATTTCATTATCCATCAAAATATCCGGATGAATCTAAATTCATTGAAGAAATTGTGAATGATATTTCAGAAAAATTGTCATATATTTTTTCAATAGAATCCAAAGGTCTTGTTGGAATTGATGATAGTTTTACATGTATTGAATCATTATTGGAAATTGAATCGAGCgaggtccgaatcataggaatttgggggatgggaggaataggtaaaactactattgctgaattcttatttgataaatattcttcccagtatgaaggaagttgtatgttgaaaaatgtaagagaagaatcacaaaagtttggtgtgccttatttatgtgagaaacttatttctgagttattagccggagaaagtcttgttttgaaaggatcatccaaagcaagatccgcttttatcaagagaaagttgagtcgaaaaaaagttttcatagtgcttgatgatatggatacattagaacagtttgaacatcttgctacacaatggttgggaccaggtagtaggatcattgtaactactagagacaagcatgtccttagaaaagttcatggaatatatgagctccagggcttgagttttgaaaattcccttaagcttttttgcttgaatgcttttgacaaagtctattctgaagctggatatgaagaggtttctaaaatggcagtcaattatgcaaaaggtgttccattggctttaaaagtcttgggatcttttttatattccaaaaccatagaagaatgggaaagtgctttgggaaaactcaagatttatcctaataaagacatttttaatgtcttaaaattgagttatgatgggctagatgatttagagaaggacatattccttgaccttgcattttttttcaaaggagaagataaggatgttgtcgtatcatttctagattcctgtggtctttttcctgctattggtataggcaacctttcacgtaaagctctcataactatttcaaattgtaatacaatagaaatgcatgatttgatagagcaaatgggtcgagaaatagttcgtcaagaatcaattaaatacccaggaagacgtagccgcttaagtaaccataaggatgtctacaatgtactgaataataataagGGAACAGACTCTATTGAAGGCATTATGTTGGACTTGTCTCAAATTACAAGAGATCTACATTTAGATGGTGACACTTTCAAAAAGATGCCTAATATAAGGATTCTCAAATTTTATGATTCCCGGAGGCATGAAACATCAGCGAATGTGTGCGTTTCTTCAACTCTCGAGTCATTTCCAAATGAACTAAGATACTTGGAGTGGAGTGGCTGCCCTATGAAGTCTCTTCCGTCAACTTTTTGTGCTGAGAAGCTTGTCACTCTTTCTATGCCAGATAGCCAACTTTCTAAACTTTGGGATGGAGTTCAGGATCTTGTAAATTTAAAGAAGATTAACCTTAGTGGATGCAAGCAGCTGGTGGAGCTTCCAGATTTTACTCGGGCATTAAACCTTGAAAAAGTATACCTCAATAAATGTGTAAGCTTGTGTGAACTTCATCCATCCATTTTATCCACCCACAAGCTCGAAACCTTGAGTGTTAGAGGTTGCAAAGCACTAAAGAGTCTTGAAAACAAGATCCATTTTAAATCTCTTCAAAAACTCGATGTTAGTGGCTGCTCAAGCTTGAAGGAATTTTCAGTGTCATCAGAGGAATTAACGAGTTTGAATTTATATGGGACAATAATCGAAATGTTGCAATCATCAATTGGTCGTCTCAACAAACTCGTAAAGTTTCATCTCACTAATATGAGACTTGAAACTCTTCCAGACGAACTGTGTCTCTTAGGATCCCTTGAGGAACTGAATCTTGAAGGATGCAAACAGTTGATTGAACTCCCTTACAATTTGAAAGCCTTATCACAGTTACAGGATGTCAACTTAATTGACTGCTGCAGCCTTGGATCTTTACCAGAGCTTCCACCATCTATTATACATTTATCTGCCACAAACTGCACATCGCTGGAGAAAGTATTCAACGCAAAGACAGTGTTCAGTTTAAATCTAATATCTATCTCATTTGAAAACTGCGAGAGGCTCGATGAGAATTCATTTGTAGAATATGTGCATCATACAATGATGGGAGTAGCAATCAGAGACTTGTCGAATGGGATGCTGCAAAATAAATATAGCGATCCATACTCTGGTGATAATAATTGGGACCCTATATATCACACTAAATCCAACGGCCAGGTTTTTTATCCCGGAAGCGAGGTTCCATCATGGTTCAAATATCAGACAAGGGAGAGTTCGGTAACCGTTGACCTTGATGCGGATGAACCTTATATCCATACGCTGGTGGGGTTCATTTTGTGCTGTGTTGTTTATCATATTCCTTCTCAAAGAGGAGTTCCTCCTATTGGTCCTGTTCGTTCTGCAAAATGGCCTCCCAGATTCAGATGTAAATCCAGTTTATCTGATAGTCAACAGTTTGCCAAAACGAGTAGATGGAGCTCAAACCATGTTTGTATATGGTTTGAAGTTAGTCATCACCATCGATTGCGTGATAAGAATGTTACATTTAAATTCGAAGCTGAATCTTTTATGATAGCTTATGTGGAAGGAAGGCCACGGTATGAGCCGTTGCGATACGAATGGGAGGTGATAGGGTGCGGGGTTTGCCCCCTGTATGCCTCAGACATCCTGGATGCCTTTCAAAATGTGGATCCGGAGTTCCAGTTCTTTTATGATAGACGCAGCTACGGAAGACGGGATCATCTTGATCACTCAGTTTTCACGCTTGACGAAGTGAAAACGAAGATGATTCACCACATGAATGATCAACAACATAGTTTTTGA 3312 0.247 MASSSFLLDAPSIKHDVFISFRGEDIRTSFLSHLRKELHRNHIDFFVDDEKLHPGDDISSTLIQAIEESSISLVIFSENYAASTWSLNELEKVIQCMKRDKRIVIPVFYNVVPSDVRHQNNSFKEAFDKHQHRLKGNMMKVQSWRLALKEASNLSGFHYPSKYPDESKFIEEIVNDISEKLSYIFSIESKGLVGIDDSFTCIESLLEIESSEVRIIGIWGMGGIGKTTIAEFLFDKYSSQYEGSCMLKNVREESQKFGVPYLCEKLISELLAGESLVLKGSSKARSAFIKRKLSRKKVFIVLDDMDTLEQFEHLATQWLGPGSRIIVTTRDKHVLRKVHGIYELQGLSFENSLKLFCLNAFDKVYSEAGYEEVSKMAVNYAKGVPLALKVLGSFLYSKTIEEWESALGKLKIYPNKDIFNVLKLSYDGLDDLEKDIFLDLAFFFKGEDKDVVVSFLDSCGLFPAIGIGNLSRKALITISNCNTIEMHDLIEQMGREIVRQESIKYPGRRSRLSNHKDVYNVLNNNKGTDSIEGIMLDLSQITRDLHLDGDTFKKMPNIRILKFYDSRRHETSANVCVSSTLESFPNELRYLEWSGCPMKSLPSTFCAEKLVTLSMPDSQLSKLWDGVQDLVNLKKINLSGCKQLVELPDFTRALNLEKVYLNKCVSLCELHPSILSTHKLETLSVRGCKALKSLENKIHFKSLQKLDVSGCSSLKEFSVSSEELTSLNLYGTIIEMLQSSIGRLNKLVKFHLTNMRLETLPDELCLLGSLEELNLEGCKQLIELPYNLKALSQLQDVNLIDCCSLGSLPELPPSIIHLSATNCTSLEKVFNAKTVFSLNLISISFENCERLDENSFVEYVHHTMMGVAIRDLSNGMLQNKYSDPYSGDNNWDPIYHTKSNGQVFYPGSEVPSWFKYQTRESSVTVDLDADEPYIHTLVGFILCCVVYHIPSQRGVPPIGPVRSAKWPPRFRCKSSLSDSQQFAKTSRWSSNHVCIWFEVSHHHRLRDKNVTFKFEAESFMIAYVEGRPRYEPLRYEWEVIGCGVCPLYASDILDAFQNVDPEFQFFYDRRSYGRRDHLDHSVFTLDEVKTKMIHHMNDQQHSF 1103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03532 1103 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 10 945 - -
Aip04g03532 1103 SUPERFAMILY "Winged helix" DNA-binding domain 417 522 IPR036390 -
Aip04g03532 1103 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 10 945 IPR044974 GO:0006952
Aip04g03532 1103 Pfam NB-ARC domain 202 423 IPR002182 GO:0043531
Aip04g03532 1103 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 157 IPR035897 -
Aip04g03532 1103 Pfam Leucine Rich Repeat 609 628 IPR011713 -
Aip04g03532 1103 SUPERFAMILY L domain-like 546 852 - -
Aip04g03532 1103 Gene3D - 188 342 IPR027417 -
Aip04g03532 1103 Gene3D - 346 430 IPR042197 -
Aip04g03532 1103 Gene3D Ribonuclease Inhibitor 700 842 IPR032675 -
Aip04g03532 1103 Gene3D Ribonuclease Inhibitor 519 699 IPR032675 -
Aip04g03532 1103 Gene3D - 10 185 IPR035897 -
Aip04g03532 1103 Pfam C-JID domain 905 1051 IPR045344 -
Aip04g03532 1103 Pfam TIR domain 14 187 IPR000157 GO:0007165
Aip04g03532 1103 SMART till_3 14 154 IPR000157 GO:0007165
Aip04g03532 1103 ProSiteProfiles TIR domain profile. 13 181 IPR000157 GO:0007165
Aip04g03532 1103 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 440 IPR027417 -
Aip04g03532 1103 PRINTS Disease resistance protein signature 215 230 - -
Aip04g03532 1103 PRINTS Disease resistance protein signature 292 306 - -
Aip04g03532 1103 PRINTS Disease resistance protein signature 381 395 - -
Aip04g03532 1103 PRINTS Disease resistance protein signature 698 714 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03532 Aip-Chr4 129793277 129797108 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03532 12 820 WRKY Transcription Factor Family AT4G12020 35.115 6.54e-115 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03532 - - ahf:112744694 1778.45