Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03520 ATGTTGGACGAAGATACCAACACCAACACCACCTCCTGGGCGCCGCGCGTGTGCGACACCTGCCGCTCTGCCCCATGTGCGGTCTTCTGCCGCGCTGACTCCGCATACCTCTGCGCGTCATGCGACGCGCGCGTGCACGCCGCCAACACCTTGGCCTCACGCCACGAGCGCGTGTGGGTATGCGAGGCCTGCGAACGCGCCCCGGCAGCGTTTCTTTGTAAGGCGGATGCAGCATCGCTCTGTTCCTCCTGCGACGCTGACATCCACTCGGCTAACCCTCTGGCGAGTCGTCACCAGAGGGTGCCAATTGGACCCATGTACGGCCCACCATCCGTCCCAGTAAATGGCACGAATAGTGAGTTCGTTGGGATGGTTGAAGATGAAGAAGATGAAGATGATGACGAAGAAGAAGCTGCTTCTTGGTTGTTGTTGAACAACACCAACACCACGGCCGCCGTGACGGCCGGCACCAACAACAACCATAATAACAGTAACAGCAGCAACAACAACCAGAATCATCATCATCACCACCAACAACAGAGTAATCATAATGGTTTCTTGTTTGGTGGTGAGGTTGACGAGTATTTGGACCTTGTGGATTGTAATTCTTGTGGTGATGATGATAACAATCATCATCATCACAGCAACAATAACAATAACCACTTTGCGGTTGATGGTGTTGATCATCGTTATGGTTATCAGCAGCAGTATGGTGGTGGCGGTGGTCAGAAGAGCTATGGTGGTGGTGGCGGCGGAGATACACCAACAACATAA 774 0.5349 MLDEDTNTNTTSWAPRVCDTCRSAPCAVFCRADSAYLCASCDARVHAANTLASRHERVWVCEACERAPAAFLCKADAASLCSSCDADIHSANPLASRHQRVPIGPMYGPPSVPVNGTNSEFVGMVEDEEDEDDDEEEAASWLLLNNTNTTAAVTAGTNNNHNNSNSSNNNQNHHHHHQQQSNHNGFLFGGEVDEYLDLVDCNSCGDDDNNHHHHSNNNNNHFAVDGVDHRYGYQQQYGGGGGQKSYGGGGGGDTPTT 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03520 257 ProSiteProfiles Zinc finger B-box type profile. 13 60 IPR000315 GO:0008270
Aip04g03520 257 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 13 212 IPR045281 GO:0009909
Aip04g03520 257 MobiDBLite consensus disorder prediction 232 257 - -
Aip04g03520 257 Pfam B-box zinc finger 58 103 IPR000315 GO:0008270
Aip04g03520 257 SMART bboxneu5 13 60 IPR000315 GO:0008270
Aip04g03520 257 SMART bboxneu5 61 103 IPR000315 GO:0008270
Aip04g03520 257 CDD Bbox1_BBX-like 17 60 - -
Aip04g03520 257 MobiDBLite consensus disorder prediction 152 187 - -
Aip04g03520 257 ProSiteProfiles Zinc finger B-box type profile. 56 103 IPR000315 GO:0008270
Aip04g03520 257 CDD Bbox1_BBX-like 60 103 - -
Aip04g03520 257 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 1 13 212 - -
Aip04g03520 257 MobiDBLite consensus disorder prediction 152 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03520 Aip-Chr4 129628064 129629000 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03520 1 227 C2C2-CO-like Transcription Factor Family AT3G02380 50.000 3.99e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aip04g03520 zf-B_box 8.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03520 - - ahf:112744683 375.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g03520 04 129628064 129629000 Aip04g03520 04 129628064 129629000 ECH