Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03512 ATGTCAGCTCCACTACCACTAACCCTTTTCCTTTTCTGCATTATCATCTTCTTCTTCCATTGCTGCATGTGCAATGACTCATCATCAACAACAACCCTTCAAATCCTTAAGCCCATCCTCCCAAACAAAAGCCCAGGCTCAGGCCCATCTCATCCATCAACAACAACCATTCCTGCATTCCCTGAACAATTTGATGTCAAAGGTTGCCCCTTGACACTCTCAGATGAACTCTTTGACGGTATAAAGAATGCTTGTGGAGGTGGTGGTGGTGGTGGTTCTGACATGGAGCTCCACCACACACGGTGTTGCCCTGTTCTTGCATCATGGTTATACTATGTATATTCTTCCACTGCATTAACCCATAGCCATACCCACACATCATCATTGTCATATGAGATGCCATTGTTACCAGATGACTCAGAAACATATGTAAATGACTTAGAGAATGCACTGAAAGTGAGAGGGATTCAACTGAAAAGACCCAATGAGACATGTGATGTTGTATTCTGCTTCTGTGGGATAAGGCTTCACCCTCTGAGTTGCCCAGATGCATTTTCAGTTAATGAAAATGGTGAACTTGTTGGGGATAAAACTGTGAGAAGGTTAGAGAAGAATTGCATTAGTAGAACCAACAATGTCAATGGCTTTCCTGGTCTTGGTGGCTGCTCCAAGTGCTTAAACACACTCTACAGGGGTTGCAAGGAGATGAGGGCTAGTGGCCTATTACTGAAGTTTCTTGAGGCAATTCTCAAAGCTGGAAACCGGATGAATGCCAGAACTTCTAGGGGAAATGCACAAGGTTTCAACCTAAGTGCTCTTAGGAAGCTTTCTGATGTGAAAAGCATTGATGGAAAGGCTAGTTTGCTACACTTCATTGTAGAGCAAGTGGCTCAGTCAAAAGGAAGAAGAGAAGCTATGAATCAAAAGCATAATATTTCCAAAATCAACGGTGATATAAGCAACTCCAATGAAAACAATAATAGCCTTGTGCAACATGAGACAGAGAAAGAGTATCTGATGCTTGGTTTACAAGTGTTATTGGGAGGTATAAAGGATGAGTTATCTGAAGTAAAGAAAGCAGCAATAATTGATCATCAGAATTTCATTAGGATGTTATACATTCTCAATGCTCGTGTTAGCAAAATTCGAGAGATTGTAACCAAATGTTGTGGCGAGAACAATGAGAGAGGTGGATTTGTTAAGGAAATGAAAGGGTTTGTAGAGGAATGTGAGGAGGAGCTTAAAGTTGTGAAAGATGAACACCTTAGGATCATGGAGCTTGTGAAGAAAACCAATGAGTATTATCTAGGAGGTGGAGGAGGATCAAACCCCTTTGAACTGTTTCTTATTGTGAGAGATCTTGTGCATGAAGAACCCCCTCGCTCATCATGGACGATCGCACAAGCAGCGGCCATGACTTCCACCTTGCGTTTGGATGAAATAGGGCTCACTGGTGGAAACGGCGTCGTTTGGCACTTCAGAGACGAATTTGTCCAGTTAAATTTTGTCCCAATCCACCTCAGCGAGTGTAACGGCCACGTCATTCACTGCCCCTCCATGTCAGCTGGCTCCGTTGCCGTTTTTGGCCCAAAACggacggaaggTTTCAGGAAGTTCATTATGGCTCAACCGAAAACAAGAATAGGTCTTGCTGGACTGGCTGTCATGGGCCAGAATCTTGCTCTCAATATTGCCGAGAAAGGCTTTCCCATCTCTGTTTACAACCGAACCACATCGAAGGTAGATGAGACCGTTGAACGAGCAAAACATGAAGGAAATCTTCCGGTTTATGGATACCATGACCCTGAAGCTTTTGTTAACTCCATTCAAAAACCAAGGGTGATAATAATGCTTGTTAAGGCCGGCGCACCTGTTGACCAGACCATTAAGACTCTATCTACCTATTTGGAAAAGGGTGATTGTATTATTGATGGTGGTAATGAGTGGTACGAGAACACTGAAAGAAGAGAGAAAGCAGTGGCTGAATTAGGACTTCTTTATCTTGGGATGGGAGTTTCAGGTGGTGAGGAGGGTGCTCGCAATGGTCCATCTTTGATGCCTGGTGGTTCGTTTGAGGCTTTCAAATACATAGAAGACATTCTTCTCAAGGTGGCAGCTCAAGTCCCTGACAGTGGACCTTGTGTTACATATGTTGGCAAAGGTGGATCTGGAAATTTCGTGAAGATGATCCATAATGGAATTGAGTATGGTGACATGCAGCTGATTGCGGAGGCTTATGATGTACTGAAGTCAGTTGGAAAGTTGTCAAATGAGGAGCTACACAATGTCTTTGCAGAATGGAACAAGGGAGAACTTCTGAGTTTCCTTATCGAAATCACTGCTGATATATTTGGAATTAAGGATGATAAAGGAGATGGATATCTTGTTGACAAGGTTCTTGACAAAACCGGCATGAAGGGTACCGGTAAGTGGACTGTTCAGCAAGCTGCCGAGTTATCAGTAGCTGCTCCCACTATTGAATCTTCTTTGGATGCTAGGTTCCTTAGCGGGTTAAAGGAAGAGAGAGTTGAAGCTGCTAAGGTCTTCAAATCAGCTGGTTTTGGCGATATCTTGGCTGATCAATCCGTAGACAAGCAGCAGTTGATCGATGATGTTAGGAAAGCACTTTATGCGGCCAAAATCTGTAGCTATGCTCAGGGAATGAATTTGATTCGTGCAAAGAGTATCGAAAAAGGATGGGATTTGAAGTTGGGTGAACTGGCCCGGATTTGGAAAGGAGGTTGCATCATTAGAGCAATATTCCTTGACAGAATCAAGAAGGCTTACGACAGGAACCCCAATCTGGCAAACCTTCTTGTTGATCCTGAGTTTGCAAAGGAAATAATTGATCGCCAATCTGCCTGGAGGAGAGTTGTTTGCCTTGCCATCAATTCTGGTATCAGCACCCCAGGTATGTCTGCTAGTCTTGCTTACTTTGACACTTACAGAAGGGAAAGATTGCCGGCTAATTTGGTGCAAGCCCAACGTGACTACTTTGGTGCTCATACGTATGAAAGGATCGATATAGAGGGATCGTACCATACCGAATGGTTCAAGCTTGCCAAGCAATCAAAAATTTAG 3081 0.4333 MSAPLPLTLFLFCIIIFFFHCCMCNDSSSTTTLQILKPILPNKSPGSGPSHPSTTTIPAFPEQFDVKGCPLTLSDELFDGIKNACGGGGGGGSDMELHHTRCCPVLASWLYYVYSSTALTHSHTHTSSLSYEMPLLPDDSETYVNDLENALKVRGIQLKRPNETCDVVFCFCGIRLHPLSCPDAFSVNENGELVGDKTVRRLEKNCISRTNNVNGFPGLGGCSKCLNTLYRGCKEMRASGLLLKFLEAILKAGNRMNARTSRGNAQGFNLSALRKLSDVKSIDGKASLLHFIVEQVAQSKGRREAMNQKHNISKINGDISNSNENNNSLVQHETEKEYLMLGLQVLLGGIKDELSEVKKAAIIDHQNFIRMLYILNARVSKIREIVTKCCGENNERGGFVKEMKGFVEECEEELKVVKDEHLRIMELVKKTNEYYLGGGGGSNPFELFLIVRDLVHEEPPRSSWTIAQAAAMTSTLRLDEIGLTGGNGVVWHFRDEFVQLNFVPIHLSECNGHVIHCPSMSAGSVAVFGPKRTEGFRKFIMAQPKTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKHEGNLPVYGYHDPEAFVNSIQKPRVIIMLVKAGAPVDQTIKTLSTYLEKGDCIIDGGNEWYENTERREKAVAELGLLYLGMGVSGGEEGARNGPSLMPGGSFEAFKYIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELHNVFAEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAAELSVAAPTIESSLDARFLSGLKEERVEAAKVFKSAGFGDILADQSVDKQQLIDDVRKALYAAKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAIFLDRIKKAYDRNPNLANLLVDPEFAKEIIDRQSAWRRVVCLAINSGISTPGMSASLAYFDTYRRERLPANLVQAQRDYFGAHTYERIDIEGSYHTEWFKLAKQSKI 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03512 1026 Gene3D Formin, FH2 domain 219 457 IPR042201 -
Aip04g03512 1026 Pfam 6-phosphogluconate dehydrogenase, C-terminal domain 724 1017 IPR006114 GO:0004616|GO:0006098
Aip04g03512 1026 PRINTS 6-phosphogluconate dehydrogenase signature 664 689 IPR006183 GO:0004616
Aip04g03512 1026 PRINTS 6-phosphogluconate dehydrogenase signature 713 741 IPR006183 GO:0004616
Aip04g03512 1026 PRINTS 6-phosphogluconate dehydrogenase signature 907 929 IPR006183 GO:0004616
Aip04g03512 1026 PRINTS 6-phosphogluconate dehydrogenase signature 546 569 IPR006183 GO:0004616
Aip04g03512 1026 PRINTS 6-phosphogluconate dehydrogenase signature 795 822 IPR006183 GO:0004616
Aip04g03512 1026 PRINTS 6-phosphogluconate dehydrogenase signature 611 640 IPR006183 GO:0004616
Aip04g03512 1026 Gene3D - 726 984 IPR013328 GO:0016491
Aip04g03512 1026 Pfam Formin Homology 2 Domain 224 455 IPR015425 -
Aip04g03512 1026 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 546 720 IPR036291 -
Aip04g03512 1026 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 722 1019 IPR008927 -
Aip04g03512 1026 Pfam NAD binding domain of 6-phosphogluconate dehydrogenase 547 717 IPR006115 GO:0050661
Aip04g03512 1026 PANTHER 6-PHOSPHOGLUCONATE DEHYDROGENASE 544 1025 IPR006183 GO:0004616
Aip04g03512 1026 SUPERFAMILY Formin homology 2 domain (FH2 domain) 223 455 - -
Aip04g03512 1026 Pfam SPARK 68 231 IPR043891 -
Aip04g03512 1026 Gene3D - 538 725 - -
Aip04g03512 1026 TIGRFAM gnd: 6-phosphogluconate dehydrogenase (decarboxylating) 548 1018 IPR006113 GO:0004616|GO:0006098
Aip04g03512 1026 Gene3D - 987 1019 - -
Aip04g03512 1026 Coils Coil 400 420 - -
Aip04g03512 1026 PANTHER 6-PHOSPHOGLUCONATE DEHYDROGENASE, DECARBOXYLATING 544 1025 - -
Aip04g03512 1026 SMART 6PGD_2 724 1018 IPR006114 GO:0004616|GO:0006098
Aip04g03512 1026 SMART it6_source 47 478 IPR015425 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03512 Aip-Chr4 129554646 129563283 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03512 214 455 FH2 protein (formin) Gene Family AT1G70140 49.597 2.24e-62 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03512 K00033 - gmx:100796103 929.087