Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03491 ATGGTTAAGCAAGCTGATTTAGTCATCATATGTGTCACTGTTGGTGTGGCCCTTGGAGTTCTCATAGCTTGCGCCACATTCTTCGCCGCGAGGTGGTACAAGAAGCGCATTCGACTCATAAGATCTTCAAATGATCCTGGTTCAACAACTCTTCCAATAAGAACAAATGGATTGGAAGCAAGCACTGAAATTAGTGCTTCTCTCACAAGTTCCATAGCCGTTTCAGGATCAGATAATCTACAAAGGAAGACACATTATTTCGGTTGGTGGAATCATCAAACTAAGGATCCAGTTTCCCCTGCTTCTGGAATTCTGAAGTACTCTTACAAAGAAATTCAAAAGGCCACAAAGAATTTCACAAATATATTAGGAGAAGGATCATTTGGCACAGTTTATAAAGCCACAATGGCTACAGGAGAGGTGGTAGCTGTGAAGATGCTTGCTCCCAACTCCAAACAAGGAGAGAAAGAGTTCCAGACAGAGGTACTTCTGCTAGGAAGACTGCATCATCGGAATCTTGTGAACTTGTTAGGATACTGTGTAGATAAAGGACAGCGTATGTTGGTTTATGAATTCATGAGTAATGGAAGTTTATCAAACCTTTTATATGATGAAGACAAGGATCTAAGTTGGGATGACAGGCTGCAGATTGCTGTTGATATTTCACATGGAATACAATACCTTCATGAAGGAGCAGTCCCACCAGTGATACATCGCGATTTGAAATCGGCCAACATACTTCTAGATCACTCCGTGAGAGCTAAGGTGGCTGATTTTGGGCTATCAAAGGAAGAGGTATTTGATGACCACAAATCTGGCCTTAAAGGCACATATGGCTATATGGATCCAGCATACATCTCCACAAGCAAGTTCACAATGAAGAGTGACATTTACAGTTTTGGTATAATAATCTTTGAGCTCATTACTGCCATCCACCCCCATCAAAATTTGATGGAATACATCAACCTTGCTGCAATGGACTATGATGGCATAGATGGGATTATAGAGACACAACTTGTGGGGAAATGCAACCTTGAAGAAGTAAGGAAGCTAGCCAAAATTGCTCACAAATGTTTGCATAAATCACCTAGAAAAAGACCCTCTATTGGTGAAATATCACAAGGTATAATGATGATTAAGCAAAGGCGCCTTGTGAAGGAAGACACTATGTCATTTGCAAGCAGTAACTACTCAAGAACTTTGAGTAGGATAGAGGATCAACAAGTTGAGTTAAGTAGGATAGCCACCACCATGAACCAAAGAGAAGGTAGATGA 1275 0.4086 MVKQADLVIICVTVGVALGVLIACATFFAARWYKKRIRLIRSSNDPGSTTLPIRTNGLEASTEISASLTSSIAVSGSDNLQRKTHYFGWWNHQTKDPVSPASGILKYSYKEIQKATKNFTNILGEGSFGTVYKATMATGEVVAVKMLAPNSKQGEKEFQTEVLLLGRLHHRNLVNLLGYCVDKGQRMLVYEFMSNGSLSNLLYDEDKDLSWDDRLQIAVDISHGIQYLHEGAVPPVIHRDLKSANILLDHSVRAKVADFGLSKEEVFDDHKSGLKGTYGYMDPAYISTSKFTMKSDIYSFGIIIFELITAIHPHQNLMEYINLAAMDYDGIDGIIETQLVGKCNLEEVRKLAKIAHKCLHKSPRKRPSIGEISQGIMMIKQRRLVKEDTMSFASSNYSRTLSRIEDQQVELSRIATTMNQREGR 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03491 424 SUPERFAMILY Protein kinase-like (PK-like) 88 373 IPR011009 -
Aip04g03491 424 Pfam Protein tyrosine and serine/threonine kinase 119 374 IPR001245 GO:0004672|GO:0006468
Aip04g03491 424 Gene3D Phosphorylase Kinase; domain 1 85 192 - -
Aip04g03491 424 PANTHER OS01G0750732 PROTEIN 9 419 - -
Aip04g03491 424 Gene3D Transferase(Phosphotransferase) domain 1 193 400 - -
Aip04g03491 424 ProSiteProfiles Protein kinase domain profile. 117 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g03491 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 236 248 IPR008271 GO:0004672|GO:0006468
Aip04g03491 424 PANTHER CALCIUM/CALMODULIN-REGULATED RECEPTOR-LIKE KINASE 2 9 419 - -
Aip04g03491 424 ProSitePatterns Protein kinases ATP-binding region signature. 123 145 IPR017441 GO:0005524
Aip04g03491 424 SMART serkin_6 117 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g03491 424 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03491 Aip-Chr4 129324890 129328565 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03491 108 418 Receptor kinase-like Gene Family AT4G02010 39.210 2.36e-70 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Aip04g03491 PK_Tyr_Ser-Thr 9.6e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03491 - - gmx:100794239 681.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g03491 04 129324890 129328565 Aip04g03491 04 129324890 129328565 ECH
Aip04g03491 04 129324890 129328565 Aip10g03169 10 129439476 129444461 PCT