Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03488 ATGGCTAGGTCTGCCAAAGGCCACCAAGAAGAATTGGACGACGACGACGAAGAACACTTCACTGCCGACACCTCTTCTCCTCACAAAGTGAAGTTGGATGAATCAAATAGTGGGAAGAGGGTGAACCCTCATCGTTCGAAGCATTCAGAGACCGAGCAGCGTAGAAGGAGTAAGATTAATGAAAGGTTTCAGGTTCTGAGAGATCTTATTCCTCAAAATGATCAAAAAAGAGATAAGGCTTCCTTTTTGTTGGAGGTTATTGAGTATATTCAGTTTCTGCAGGAAAAACTGCAAATTTATGAACAGACTTGTGAAGGATGGAATCAGGAACCAACGAAATTAATCCCATGGAGAGGTCATCATGGACCTGCAGAAAATAAGGCAGATACTTCTCAAGCTATGCAAAATGGATCTGCTCACGAAAAAAATGATGTCTCTCCATTATTGCCAAAAAATGTACAGAACCCAATAGAGTCTGACTTGTCAACAACAACTATCCAAAAGGGCCACACCATTGGTTCAGCTGTAGAAGCAGTTCCAATGGGCATGCAAATGAGACTGGATGCATTTGACCCAGTTGTAAGCAGCAGTATGCCAAACCAACGTCTGCATCAACCTATATCTAATGCTGATATGTCCTTCCAAATCCAGCCCCAAGTTTTGTTTAGTAAACCAAGCAGCGGCAACTATATGGTTTCGGATAATGTGTTGATGGAACATGAAGAGCTGACGAATGAAAGTGAATCACAAAGCATTTCAAATGCGTACTCGCAAGGAGTATTAGATACTCTTACACAAGCTCTGCAGTCTTCAGGAGTGGATCTGTCTCAGACTAGTGTCTCAGTGCAAATTGATGTTGGTAGAAGATCAAATCCGGGCTTTATCCCTTCTGCATCTAGCTCAAAGGTGTATGGAAACCAGTTTGTGACCAATAGAGTTAATTACTGCAGTGAAGACTCTGATCAAAGTCTAAAGAGGCTGAGAAGAGATGCCACCTAA 999 0.4224 MARSAKGHQEELDDDDEEHFTADTSSPHKVKLDESNSGKRVNPHRSKHSETEQRRRSKINERFQVLRDLIPQNDQKRDKASFLLEVIEYIQFLQEKLQIYEQTCEGWNQEPTKLIPWRGHHGPAENKADTSQAMQNGSAHEKNDVSPLLPKNVQNPIESDLSTTTIQKGHTIGSAVEAVPMGMQMRLDAFDPVVSSSMPNQRLHQPISNADMSFQIQPQVLFSKPSSGNYMVSDNVLMEHEELTNESESQSISNAYSQGVLDTLTQALQSSGVDLSQTSVSVQIDVGRRSNPGFIPSASSSKVYGNQFVTNRVNYCSEDSDQSLKRLRRDAT 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03488 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 43 93 IPR011598 GO:0046983
Aip04g03488 332 CDD bHLH_AtBIM_like 45 118 - -
Aip04g03488 332 Pfam Helix-loop-helix DNA-binding domain 45 94 IPR011598 GO:0046983
Aip04g03488 332 Gene3D - 42 114 IPR036638 GO:0046983
Aip04g03488 332 PANTHER TRANSCRIPTION FACTOR BIM3 1 330 - -
Aip04g03488 332 MobiDBLite consensus disorder prediction 118 148 - -
Aip04g03488 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 44 121 IPR036638 GO:0046983
Aip04g03488 332 SMART finulus 49 99 IPR011598 GO:0046983
Aip04g03488 332 Coils Coil 90 110 - -
Aip04g03488 332 MobiDBLite consensus disorder prediction 1 59 - -
Aip04g03488 332 MobiDBLite consensus disorder prediction 128 148 - -
Aip04g03488 332 MobiDBLite consensus disorder prediction 21 59 - -
Aip04g03488 332 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 330 IPR044295 GO:0003700|GO:0006351|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03488 Aip-Chr4 129293761 129296564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03488 3 302 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 40.317 1.40e-57 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip04g03488 HLH 1.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03488 - - ahf:112797954 503.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g03488 04 129293761 129296564 Aip04g03488 04 129293761 129296564 ECH