Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03478 ATGACATTGTTTGTGTGGTTTGAATTTGATATTATGCAGAAGAAGACTCATGAGAGCATCAACAACAGACTCGCACTTGTCATGAAGAGTGGCAAGTACACTCTCGGTTACAAGACCGTTCTCAAATCTCTCAGAAGCTCCAAAGGGAAATTGATTATCATCGCTAACAACTGCCCACCATTGAGGAAGTCAGAAATAGAGTACTATGCCATGTTGGCAAAGGTTGGAGTCCATCATTACAATGGGAACAATGTCGACTTGGGAACTGCATGTGGAAAATATTACAGAGTGTGCTGCCTCAGCATTATTGATCCTGGTGATTCTGATATCATTAAGACACTGCCTGGCGAACATGAAAGGAACAATCAAAACCACCACCTAAACTCCAAAACCAACCAAAATCACACTTCTGGATATAAAATGGGCAAGGGAAGTAGGGATGAGGTTCTTGTGCCTGTGGTCTCTTGTCAATCAAGAAACATAGAGCAGTCCCATTTCCATCTCAAGGTAAGTTTACCAGAAAAGGTATTCCCAGTCACGGCATGCGAAGCAGAGGCTGGAGGATATGAAGTCTTCAATGGCGACAACAAAGTGGGAAGTGTTTAG 606 0.429 MTLFVWFEFDIMQKKTHESINNRLALVMKSGKYTLGYKTVLKSLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDPGDSDIIKTLPGEHERNNQNHHLNSKTNQNHTSGYKMGKGSRDEVLVPVVSCQSRNIEQSHFHLKVSLPEKVFPVTACEAEAGGYEVFNGDNKVGSV 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03478 201 MobiDBLite consensus disorder prediction 116 143 - -
Aip04g03478 201 ProSitePatterns Ribosomal protein L30e signature 2. 86 106 IPR022991 -
Aip04g03478 201 PANTHER RIBOSOMAL PROTEIN L30 12 118 IPR039109 GO:0003723
Aip04g03478 201 Hamap 50S ribosomal protein L30e [rpl30e]. 18 115 IPR000231 GO:0003723|GO:0003735|GO:0022625
Aip04g03478 201 Gene3D - 11 114 IPR029064 -
Aip04g03478 201 PANTHER RIBOSOMAL PROTEIN L30E-RELATED 12 118 - -
Aip04g03478 201 MobiDBLite consensus disorder prediction 126 140 - -
Aip04g03478 201 ProSitePatterns Ribosomal protein L30e signature 1. 30 54 IPR022991 -
Aip04g03478 201 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 19 111 IPR004038 -
Aip04g03478 201 SUPERFAMILY L30e-like 19 112 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03478 Aip-Chr4 129222712 129225135 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03478 14 118 Cytoplasmic Ribosomal Protein Gene Family AT3G18740 86.667 7.41e-66 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03478 K02908 - rcu:8276054 216.083