Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03476 ATGGGTTCTGTTTGTTGTTGTTTGAGTGTTAATGATTTTGAAGATTATATGAATCCAAATAGTCCTGTATATAGGAACCGTCAGTGCCTCAGTTCCGTCTTACAGAACTTTTTGAATGCGTATGCATCAATATTCCGTAGAGGGGAAATGCAGGCAATTCCTTCATCTATACAGGGGGCAGCATCTATGACTTCCACAGCATCGCTTGATAATTCTCTATCTGACATGTACCGCTCTCCTCCAAGGCCAATGCCTTATGATGCAGACCCGAGGCATTTCCGCTCTCAGCATGATAGACTAGTTTCACGACGTGAGAAGGGTTCAAGTCATGTGAATGATGAGGCAGAACCTCTAAGAAGTGATCTAGATGAGGATGACCAACAATCTTTAACTTCAAGCAACAAGTGGCATGAACGTGCTAGTGAAGATGGATCCAAAGAATACCACTCTAAGTCTTTAATAAGGCTTTCATCAGCAAGACCTACCACTGGAGTTGGACTTGTCTATTCGTCCTCAGAAGAGGAGGATTGCTGTCCAACTTGTCTTGAAGAATATACTGAAGAGAATCCGAAGATAGTGACAAAATGCTCTCATCATTTTCATCTTGGTTGCATTTATGAGTGGATGGAGAGAAGTGACACCTGTCCAGTTTGTGGGAAGGTGATGGTATTTGATGAAACGACGTAA 687 0.4236 MGSVCCCLSVNDFEDYMNPNSPVYRNRQCLSSVLQNFLNAYASIFRRGEMQAIPSSIQGAASMTSTASLDNSLSDMYRSPPRPMPYDADPRHFRSQHDRLVSRREKGSSHVNDEAEPLRSDLDEDDQQSLTSSNKWHERASEDGSKEYHSKSLIRLSSARPTTGVGLVYSSSEEEDCCPTCLEEYTEENPKIVTKCSHHFHLGCIYEWMERSDTCPVCGKVMVFDETT 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03476 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 161 225 IPR013083 -
Aip04g03476 228 Pfam RING-H2 zinc finger domain 173 218 IPR024766 GO:0008270
Aip04g03476 228 SUPERFAMILY RING/U-box 173 225 - -
Aip04g03476 228 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 227 - -
Aip04g03476 228 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 227 - -
Aip04g03476 228 MobiDBLite consensus disorder prediction 71 152 - -
Aip04g03476 228 MobiDBLite consensus disorder prediction 85 150 - -
Aip04g03476 228 SMART ring_2 178 218 IPR001841 -
Aip04g03476 228 ProSiteProfiles Zinc finger RING-type profile. 178 218 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03476 Aip-Chr4 129206747 129210929 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03476 1 226 C3H Transcription Factor Family AT5G38895 53.097 4.55e-87 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03476 - - ahf:112797939 447.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g03476 04 129206747 129210929 Aip04g03476 04 129206747 129210929 ECH