Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03473 ATGGGAAGAGGTAGGGTTCAGCTGAAGCGGATCGAGAACAAAACAAGCCAGCAAGTAACGTTTTCAAAGAGGAGAACGGGGCTTCTCAAGAAAGCACACGAAATCTCTGTGCTCTGTGATGCTCAGGTTGCATTGATTATGTTCTCTACCAAAGGAAAACTCTTTGAGTATTCATCTGAATCCAGCATGGAAGACATTCTGGAACGATATGAAAGACAGGCTCATGCTGAATTTGCTAGCACAAACGATGAACCACAGGTACACTTCTTATTGAGGATTCTATctaattttggtgTACAAATAATATTTTTGTTATTATATAACCTTCAATATATATATATATATAGGAATTTTGTGGGAAATGATCTGGACCCGTTGAGTTTGAGAGAGCTTCAAAGTTTGGAGCAGCAGCTTGATGCATCTCTAAAGCGTATCCGAATAAGAAAGGTGATGATCATGAACAATGCTTCCCATTTTTCATTTTTAGCAAAAATGAAAGATAAAGAGAAGACAATGAGTGAAGGTCCACAAGTCTGCCTTGAAACTCTGGGAAAAAGTACACCTAACATCAACTTGTCTTCTCAAGATCACCTACCACCACAAAGACTAGTTCCTTGTCTAAATCTCAGTGGGAGAATACTGGAAGAAACAGTTGAAGCTCAAGATGGTGCTGGTGGCAGCACTGTGATCCCACCATGGATGCTTCAACATTTGACAAGCTAA 723 0.3928 MGRGRVQLKRIENKTSQQVTFSKRRTGLLKKAHEISVLCDAQVALIMFSTKGKLFEYSSESSMEDILERYERQAHAEFASTNDEPQVHFLLRILSNFGVQIIFLLLYNLQYIYIYRNFVGNDLDPLSLRELQSLEQQLDASLKRIRIRKVMIMNNASHFSFLAKMKDKEKTMSEGPQVCLETLGKSTPNINLSSQDHLPPQRLVPCLNLSGRILEETVEAQDGAGGSTVIPPWMLQHLTS 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03473 240 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN FUL-L 1 176 - -
Aip04g03473 240 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Aip04g03473 240 PANTHER MADS BOX PROTEIN 1 176 - -
Aip04g03473 240 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Aip04g03473 240 SUPERFAMILY SRF-like 2 85 IPR036879 GO:0003677|GO:0046983
Aip04g03473 240 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Aip04g03473 240 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Aip04g03473 240 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aip04g03473 240 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aip04g03473 240 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aip04g03473 240 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Aip04g03473 240 Pfam K-box region 116 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03473 Aip-Chr4 129186396 129196675 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03473 1 174 MADS-box Gene Family AT1G26310 52.222 1.18e-49 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Aip04g03473 K-box 3.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03473 K09264 - gmx:100786580 237.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g03473 04 129186396 129196675 Aip01g02255 01 119233786 119240425 ECH
Aip04g03473 04 129186396 129196675 Aip10g02825 10 120922545 120925254 ECH
Aip04g03473 04 129186396 129196675 Aip04g03473 04 129186396 129196675 ECH
Aip10g03164 10 129357314 129367901 Aip04g03473 04 129186396 129196675 PCT