Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03470 ATGGTGATTATGATAATGGGTTCAGAGAGAGGGTGGAAGAAAGGGTCATGGACTCATGAAGAGGACAAGTTGCTCACTGAATATGTCACCTTGCATGGGGAGTGTAGGTGGAGTTCTGTGGCCAAGTTCACAGGTTTAAATAGGAGTGGCAAAAGTTGCAGGTTGAGATGGGTGAATTATTTGAGGCCTGGTCTCAAGAAGGGTCAATTAACACCAATGGAAGAAGGAATAATATTTGAATTGCATGCTATTTTGGGAAACAAGTGGTCAACAATAGCAAGGTACTTGCCAGGTAGAACTGATAATGAGATAAAGAACTATTGGAGAACCCACTTCAAAAAGAAAGAGGATTCCAAGCATAATAACAAGAAGCTAAAAAAGAGAAGATCAAAGGTGACAAAAGAGCAAGTAGTAATGGAGGACACCAACAAAAGCAATAATAATGAAAATACCAAATCCTATGATGATGAGACAAAAGAAAACTACTACAATGATCAACACAATAATATGGGGTTTATTTACCCTAATAATAATCCAACAATGTTATTAGAGCAGCAACAAAGCTTCCCTTTGATGCACCAAGATTATTTGTCATCACCTTCATGGCCAGACACTACAACAGCAGATTATGATGCCTTCTTGTGGTTTAGTTTATGGGACTTTGATGTACCACAAGGCTTTGAAGAACATGTTAACAACCTCACCAAATATGTGCTCCCAAACCAAGCTACCTTTGGTGATGGAGGGACTCCCATGCAAAAATAA 765 0.3895 MVIMIMGSERGWKKGSWTHEEDKLLTEYVTLHGECRWSSVAKFTGLNRSGKSCRLRWVNYLRPGLKKGQLTPMEEGIIFELHAILGNKWSTIARYLPGRTDNEIKNYWRTHFKKKEDSKHNNKKLKKRRSKVTKEQVVMEDTNKSNNNENTKSYDDETKENYYNDQHNNMGFIYPNNNPTMLLEQQQSFPLMHQDYLSSPSWPDTTTADYDAFLWFSLWDFDVPQGFEEHVNNLTKYVLPNQATFGDGGTPMQK 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03470 254 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Aip04g03470 254 CDD SANT 16 61 IPR001005 -
Aip04g03470 254 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Aip04g03470 254 PANTHER MYB TRANSCRIPTION FACTOR 5 233 - -
Aip04g03470 254 Gene3D - 69 144 - -
Aip04g03470 254 Gene3D - 13 66 - -
Aip04g03470 254 Coils Coil 115 135 - -
Aip04g03470 254 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Aip04g03470 254 SMART sant 13 63 IPR001005 -
Aip04g03470 254 SMART sant 66 114 IPR001005 -
Aip04g03470 254 MobiDBLite consensus disorder prediction 115 156 - -
Aip04g03470 254 CDD SANT 71 112 IPR001005 -
Aip04g03470 254 MobiDBLite consensus disorder prediction 116 131 - -
Aip04g03470 254 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Aip04g03470 254 Pfam Myb-like DNA-binding domain 68 111 IPR001005 -
Aip04g03470 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Aip04g03470 254 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 5 233 IPR044676 GO:0003700|GO:0006355|GO:0043565
Aip04g03470 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03470 Aip-Chr4 129150444 129152124 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03470 11 222 MYB Transcription Factor Family AT3G30210 50.926 2.91e-66 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip04g03470 Myb_DNA-binding 3.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03470 K09422 - gmx:100785540 260.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g03470 04 129150444 129152124 Aip04g03470 04 129150444 129152124 ECH