Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03460 ATGGGCTTCTTCTTCTCTTTGATGTCACACCACAAAGCTGTTCCCACTTGCTTTGTGTTCTTCTTCCTGCTTTCTTGCACCTGCTTCACTTCAACAGAAGCTTACGATGCACTTGACCCAAATGGAAACATCACAATCAAATGGGATATCATAAGCTGGACACCTGATGGTTATGTTGCTGTTGTTACAATGAACAACTTCCAACAATATCGGCATATTGCAGCACCTGGCTGGTCAATGGGATGGACATGGGCGAAGAAGGAGGTTATATGGAGCATGATGGGAGGACAGACCACTGAACAAGGAGATTGTTCAAAGTTTAAGGGAAACCCTCCACATTGCTGTAAGAAGGATCCGACCGTTGTGGATTTACTTCCCGGCACACCTTACAACCAGCAAATAGCAAATTGCTGCAAAGGTGGAGTACTTAGCTCATGGGCCCAGGATCCGACCAACGCAGTCGCATCGTTTCAAGTCAGTGTTGGTAGAGCTGGAACCACCAACAGAACTGTCAAAGTGCCAAAAAATTTCACCTTGAAAGCACCCGGTCCGGGCTATACTTGCGGGCCAGCAAAAATTGTGCCACCAACAAAGTTCATTCAATCAGACAAAAGAAGAGTGACCCAAGCACTCATGACATGGAACGTGACATGCACATATTCGCAGTTTCTAGCCCAGAAAACTCCCACTTGCTGTGTCTCTCTCTCGTCGTTCTATAATGATACTATTGTGCCTTGCCCAACATGTGCATGTGGCTGCCAGAGCAACTCATCTTGTGTAAATGCAAATACGCCACATTTGGCATCGGTCGTTGCTGGAAAGAATAACTTTTCTCCTTTAGTTCAATGCACTAGCCATATGTGTCCGGTTAGAGTCCACTGGCATGTTAAGCTTAACTACAAGGAGTACTGGCGCGTGAAGGTCACGGTTACTAATTTCAATTACAGGATGAATTATTCAGAGTGGAACTTAGTTGTTCAACACCCGAACTTTGATAATCTGACTCAACTTTTCAGTTTCAACTACAAGTCATTAACTCCTTATGGTAACATAAATGATACTGCTATGCTTTGGGGAGTTAAGTTCTATAATGATTTTCTCAATGAAGCTGGGCCTAATGGTAATGTACAATCAGAGCTGCTCTTCAGAAAGGATAAGTCAACTTTCACTTTCGAGAAAGGTTGGGCTTTCCCTCGAAGGATCTATTTCAATGGCGACAACTGCGTGATGCCACCACCGGATGCTTATCCATGGTTGCCTAATGCTGGTTCTCAAAAGGAAGTTTCCTTGCTTGTATTAGTGTTGGCTTATTTGGTATCCTTGGTCTTTTACGCATGTGCTTGA 1344 0.4412 MGFFFSLMSHHKAVPTCFVFFFLLSCTCFTSTEAYDALDPNGNITIKWDIISWTPDGYVAVVTMNNFQQYRHIAAPGWSMGWTWAKKEVIWSMMGGQTTEQGDCSKFKGNPPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLSSWAQDPTNAVASFQVSVGRAGTTNRTVKVPKNFTLKAPGPGYTCGPAKIVPPTKFIQSDKRRVTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNDTIVPCPTCACGCQSNSSCVNANTPHLASVVAGKNNFSPLVQCTSHMCPVRVHWHVKLNYKEYWRVKVTVTNFNYRMNYSEWNLVVQHPNFDNLTQLFSFNYKSLTPYGNINDTAMLWGVKFYNDFLNEAGPNGNVQSELLFRKDKSTFTFEKGWAFPRRIYFNGDNCVMPPPDAYPWLPNAGSQKEVSLLVLVLAYLVSLVFYACA 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03460 447 PIRSF COBRA 6 447 IPR006918 GO:0010215|GO:0031225
Aip04g03460 447 PANTHER PROTEIN COBRA 12 446 IPR006918 GO:0010215|GO:0031225
Aip04g03460 447 Pfam COBRA-like protein 58 221 IPR006918 GO:0010215|GO:0031225
Aip04g03460 447 PANTHER COBRA-LIKE PROTEIN 12 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03460 Aip-Chr4 129024948 129027526 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03460 20 445 COBRA Gene Family AT3G02210 74.769 0.0 691
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03460 - - gmx:100783820 848.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g03460 04 129024948 129027526 Aip04g03460 04 129024948 129027526 ECH
Aip10g03154 10 129094743 129097422 Aip04g03460 04 129024948 129027526 PCT
Aip04g03460 04 129024948 129027526 Aip10g03153 10 129091463 129094489 PCT