Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03441 ATGGCAGCAGCTGCTTCAAAAAATACCTTTTGTCCCCCTAATTTTCTCCGCTTAACTTGCGCGTTGACACTTGTGTTAGGTAAATTCAGAAGGCCGGCGGCCGGCAAATGGATTCCATTTCCATTCCCATGTTCTAAAGTCGTTTTCAGATGTTTACGCTTTGGTGATTCAAAGAAGGAGAAAAAATACCCAACCGTAATAGAAGAACTATGCCATCATTTTTCATTTGAAGCTCTTAGAAAGTCAACCAACGACTTTGACGAGAAACTTAAAATCGGAGAAGGAGGCTTTGGAAAGGTGTACAAAGGTTGTCTCAAACATAATAATGGCGATGTAACTGATTATTCGATCGCATTGAAGGTGAACAAGTGTCAGAACTCCATTCAAACTCCCCGTGAGTTCAAGACGGAAATTGAGATGCTATGTCAGCTTCGTCACCCTAACATAATATCTCTGATGGGATTCTGCTACCAACAAGAGAATATGATTGTTGTGTACGAGTACATGGCGAATGGATCACTCCATGATTACTTGAGTAATAAGAACAAAGAACCACTGTCATGGAAGAAGAGACTAGAGATCTGCATCGGAGTAGCACGTGCTCTTCACTACCTTCATGCTGGAGCCAAGCGTTGTATCGTTCACTGTGATATAAAACCACAAAACATTCTATTGGATAGGAATATGGTCCCCAAACTCTCAGATTTCGGGTTTTCATTGCAGGGATCGCTCTCTGATAAATGTGATGTTTACTCCTTTGGTATGGTTCTACTACACTTGGTAGGCCATAATGTGTTGCATTACTTAATTCAACATGAAGAACACGCTCTTGAGGAGACAATGGATCCAATTCTGAATGGAAAGGTTGCACCAGATTGTTGGCAAGTATTTGCTAGTGTCATACAGAGTTGCCTGGATTATGAAGCAGACGAGCGACCAACAATGGGCGAAGTAGAGATATTGCTTGAGCATGCTCTCTCATTGCAGCAACAAGCTGATGATATTACAAACATCAATGCTGCTGCTCCCTTTACTTTGTTATCCACTACTCATTTCTCCGATATATTCAGATTTTCAGGTAGTATAAATAATGGTGATCTAACCTCTTACGCTCCAATGGAAGGAGGCTTATGCTAG 1137 0.4134 MAAAASKNTFCPPNFLRLTCALTLVLGKFRRPAAGKWIPFPFPCSKVVFRCLRFGDSKKEKKYPTVIEELCHHFSFEALRKSTNDFDEKLKIGEGGFGKVYKGCLKHNNGDVTDYSIALKVNKCQNSIQTPREFKTEIEMLCQLRHPNIISLMGFCYQQENMIVVYEYMANGSLHDYLSNKNKEPLSWKKRLEICIGVARALHYLHAGAKRCIVHCDIKPQNILLDRNMVPKLSDFGFSLQGSLSDKCDVYSFGMVLLHLVGHNVLHYLIQHEEHALEETMDPILNGKVAPDCWQVFASVIQSCLDYEADERPTMGEVEILLEHALSLQQQADDITNINAAAPFTLLSTTHFSDIFRFSGSINNGDLTSYAPMEGGLC 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03441 378 Gene3D Transferase(Phosphotransferase) domain 1 169 242 - -
Aip04g03441 378 Pfam Protein tyrosine and serine/threonine kinase 90 239 IPR001245 GO:0004672|GO:0006468
Aip04g03441 378 ProSitePatterns Protein kinases ATP-binding region signature. 92 120 IPR017441 GO:0005524
Aip04g03441 378 Gene3D Phosphorylase Kinase; domain 1 51 168 - -
Aip04g03441 378 ProSiteProfiles Protein kinase domain profile. 86 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g03441 378 SMART serkin_6 86 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g03441 378 Gene3D Transferase(Phosphotransferase) domain 1 243 337 - -
Aip04g03441 378 PANTHER OS07G0166700 PROTEIN 245 340 IPR045272 GO:0004714|GO:0006468
Aip04g03441 378 PANTHER TYROSINE KINASE FAMILY PROTEIN 59 244 - -
Aip04g03441 378 PANTHER OS07G0166700 PROTEIN 59 244 IPR045272 GO:0004714|GO:0006468
Aip04g03441 378 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Aip04g03441 378 PANTHER TYROSINE KINASE FAMILY PROTEIN 245 340 - -
Aip04g03441 378 SUPERFAMILY Protein kinase-like (PK-like) 63 318 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03441 Aip-Chr4 128906162 128907684 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03441 25 334 Receptor kinase-like Gene Family AT3G51550 37.500 8.01e-65 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Aip04g03441 PK_Tyr_Ser-Thr 5.3e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03441 - - adu:107486591 432.565