Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03440 ATGCTTGGCAAATATTTGAGCTTCTGCCATTCAGAGGATGCAAGTTCATCTAATAAATGTTATCTAACAGTGATTGAAGAGCTATGCCCTCAATTTTCTCTTGCTGATCTTAGGAAATCAACCAACAACTTCGATGAAAACCAAGTAACTAGAAGATCAGTATTTAACACAGTATACAAAGGTTGTCTCAAACATAATGGTGTGACTGATTATGCAGTGACATTGAAGAGGTTGAAAAGTAAATCTGACCAATGGAAGTTCAGGAAGGAAATTGAGTTCCACTGCCAGCTCTCTCATCCTAATTTGGACTCTCTTATAGGATTCTGTGACCACAAAGAAGAGAAGATTCTTGTGTATGAACACATGTCCAATGGCTCTCTCTATGATTGCTTGCGTTCCAAGGATATCGAGCCACTTTCATGGAAGAAAAGGCTAGAAATATGCATTGGAGCAGCTCGTGGGCTACACTACCTTCACACAGGAGCCAAGCGCCCTATCTTTCACTGCGATATCAAACCTCAAAATATTCTTTTGGATAACAACATGGTACCAAAACTCTCACATCTTGGATTTTCCTTACAAGGTCCACTATTAAGGTCAAAGGCAAAGCCTATAAAAGTGGACATGATGATTGGTACACCTGGTTTCATGGCACCTGAGTATGTCCTAACCAAAACCTTCACAGATAAATGTGATGTTTATTCCTTTGGGATAGTTTTAATGGTAGTTTTATCCACTAGCTACAAGCAGAGCTTCTTTGAGAAGATGTACATGATGGCCGACTCAGATTTGTTTTTAGAAGAGCCATTGTATTTAATGACTCCATATGTGGATATACCTAGCTTTTTGGAGAGGATTTCGGTTGATGAGATTATTGATCCAGTGTTATTGGGAAAGACTGCACCAGAATCTTTGGGAGTATTCATAGATATCACAAAAAGATGCTTAAGTAAAGATGCAAACGAAAGACCAGATATGGGTGAAGTACAAGTTGAACTTGAGCAAGCACTAGCACTACAAGAGGAGGCTGATGCATGCTCGGAACCATGA 1050 0.3952 MLGKYLSFCHSEDASSSNKCYLTVIEELCPQFSLADLRKSTNNFDENQVTRRSVFNTVYKGCLKHNGVTDYAVTLKRLKSKSDQWKFRKEIEFHCQLSHPNLDSLIGFCDHKEEKILVYEHMSNGSLYDCLRSKDIEPLSWKKRLEICIGAARGLHYLHTGAKRPIFHCDIKPQNILLDNNMVPKLSHLGFSLQGPLLRSKAKPIKVDMMIGTPGFMAPEYVLTKTFTDKCDVYSFGIVLMVVLSTSYKQSFFEKMYMMADSDLFLEEPLYLMTPYVDIPSFLERISVDEIIDPVLLGKTAPESLGVFIDITKRCLSKDANERPDMGEVQVELEQALALQEEADACSEP 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03440 349 Gene3D Transferase(Phosphotransferase) domain 1 122 347 - -
Aip04g03440 349 Pfam Protein tyrosine and serine/threonine kinase 54 330 IPR001245 GO:0004672|GO:0006468
Aip04g03440 349 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Aip04g03440 349 PANTHER TYROSINE KINASE FAMILY PROTEIN 15 345 - -
Aip04g03440 349 PANTHER OS07G0166700 PROTEIN 15 345 IPR045272 GO:0004714|GO:0006468
Aip04g03440 349 SMART serkin_6 44 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g03440 349 Gene3D Phosphorylase Kinase; domain 1 6 121 - -
Aip04g03440 349 SUPERFAMILY Protein kinase-like (PK-like) 19 333 IPR011009 -
Aip04g03440 349 ProSiteProfiles Protein kinase domain profile. 44 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03440 Aip-Chr4 128904555 128905690 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03440 34 341 Receptor kinase-like Gene Family AT5G59700 40.385 3.60e-63 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Aip04g03440 PK_Tyr_Ser-Thr 1e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03440 - - ahf:112797906 662.529