LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip04g03439	ATGGTGCCTAAGCTCCCAGACTTTGGGCTTTCATTGCAGGGACCACTATCTACTTCCAAACCAAAACCAATTGCAGTAGACTATGTTGCAGGTACATTTGGATACTTAGCCCCTGAGTGTTTCCAATGCCTGACTGTTACAGATAAATGTGACGTTTACTCCTTTGGTATGGTTCTACTTGTAATGGTATGCATGAAGGAGAAGGATTTGTTTCTTAGCAAGGCCAACATGTTAAGTAACCAACATTTGGAGGGGAAGAGTGAAATCAAATACTTAGAAAAGTTCATTGATGATCAAGTTCAACCATGGAATGTAATAGCCTTTATGCAGCAATTCCCAATCGAAGAGATCATTGATCCAACCCTCAGGGGAAAGATTGTACCAGAGTGCTGGGAAGTATTCATGGATGTTACAAAAAGATGTTTGATGCATGAACCTGATGAACGACCAACAATGGGTGAAGTAGAAGTGTTGCTTGAGCATGCTTTGTTATTGCAGGCACAAGCAGATATCAAAAATAACAATGGTTGTTATTCTTTATCATCCACCACCATTATAAACTTAGGTGAAGTCATTTCTATGCATGATATTCATTTAGAAGAGTTGATATTTCATCAGTTTTCTCTAGCCGATCTTAGGCGAACAACCTTCGGCTTTGAACGCAGAGTCATTGGTAGAGGAAGCTTTGCTCTAACATGGAAGAAAAGACTAGAAATATGCATTGGAGTAGCAGAAGGATTGAACTACCTTCACACAGCATCAATTTTTCACCATAACATAAAACTCAGCAACATCCTTTTGGATTATGATATGGTGCCCAAACTCTCAGATTTTGGGCTCCCCTGGTCCAAGAAAATTCATGCAGAAGATTATGCTGCTCCGGAGTTGTTACAAGGACATGATTTCACAGATAAATGTGATGTTTATTCCTTTGGTATAATTCTCTTAAAAATGTTTGAAGCAAATGAGAGACCAACAATGAATGAAGTGATAGCTCAACTTCAGCATGCCCTGGCACTGCAAGAGGAAGCAGATTCCAACACAAGTGGTGATTACAACTTGTTATCTGTGACCTTTGATCCTCCGGTTGGAGGAAGCATATATTATTAA	1110	0.3946	MVPKLPDFGLSLQGPLSTSKPKPIAVDYVAGTFGYLAPECFQCLTVTDKCDVYSFGMVLLVMVCMKEKDLFLSKANMLSNQHLEGKSEIKYLEKFIDDQVQPWNVIAFMQQFPIEEIIDPTLRGKIVPECWEVFMDVTKRCLMHEPDERPTMGEVEVLLEHALLLQAQADIKNNNGCYSLSSTTIINLGEVISMHDIHLEELIFHQFSLADLRRTTFGFERRVIGRGSFALTWKKRLEICIGVAEGLNYLHTASIFHHNIKLSNILLDYDMVPKLSDFGLPWSKKIHAEDYAAPELLQGHDFTDKCDVYSFGIILLKMFEANERPTMNEVIAQLQHALALQEEADSNTSGDYNLLSVTFDPPVGGSIYY	369

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip04g03439	369	Pfam	Protein kinase domain	234	323	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aip04g03439	369	Pfam	Protein kinase domain	3	155	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aip04g03439	369	PANTHER	TYROSINE KINASE FAMILY PROTEIN	319	356	-	-
	Aip04g03439	369	ProSiteProfiles	Protein kinase domain profile.	44	369	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aip04g03439	369	PANTHER	TYROSINE KINASE FAMILY PROTEIN	1	181	-	-
	Aip04g03439	369	SUPERFAMILY	Protein kinase-like (PK-like)	221	337	IPR011009	-
	Aip04g03439	369	SMART	serkin_6	44	369	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aip04g03439	369	PANTHER	TYROSINE KINASE FAMILY PROTEIN	224	318	-	-
	Aip04g03439	369	PANTHER	OS07G0166700 PROTEIN	1	181	IPR045272	GO:0004714\|GO:0006468
	Aip04g03439	369	Gene3D	Transferase(Phosphotransferase) domain 1	1	181	-	-
	Aip04g03439	369	PANTHER	OS07G0166700 PROTEIN	319	356	IPR045272	GO:0004714\|GO:0006468
	Aip04g03439	369	Gene3D	Transferase(Phosphotransferase) domain 1	221	355	-	-
	Aip04g03439	369	PANTHER	OS07G0166700 PROTEIN	224	318	IPR045272	GO:0004714\|GO:0006468
	Aip04g03439	369	SUPERFAMILY	Protein kinase-like (PK-like)	2	159	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip04g03439	Aip-Chr4	128896252	128897903	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip04g03439	230	328	Receptor kinase-like Gene Family	AT2G23200	44.828	3.02e-22	96.7

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Aip04g03439		Pkinase	1e-19	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip04g03439	-		-	adu:107486597	432.95