Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03420 ATGCTCAGGCTCCACTTCTGTGAGCTTGATCCCGTGATTCAAATCCCCGGTGACAGGGTATTCTACATCTATATACAGGATCAGATGGTTGATGATCACGCTGATGTTCTCATGTGGACTAATGGACAAAGAGGCGTGCCTATTGTGAAAGATTATGCAGTCATTGTTCCTTCAGATAATCAGAAAAATGCCAATATCTCACTGAAAATGCATCCTAGTCCACGCACTGGTTACGTTGATGTAGTTTTAAACGGACTCGAACTCTTCAAAATCAACGACTCGCGCGGTAACCTCGCCAGACCTAACCCTGATCCACGTCCCAAAGCACCTTCCGGCAATCCAGAGGTTTTCAGCAGCAAGAATAATACCCCTACTGCAGCTGTGGCAGGTGCAGTTTCAGGTGCTATTTTGCTGTCAGTTATAGTTGTTTCGATTTTCTTCCTCATGAAACGCTGGAGGAGGAAAAGCGGCGAGGGTGATTATTACAATAGTTTGAAGCACAAATCAGAGGGATCTTCTCAGCTTCCCACGAATCTCTGCTGTCACTTCTCAATTGAAGAAATCAGAACCGCCACCAACAACTTCGACGAACTCTTCGTGATCGGTGCCGGAGGGTTCGGGAACGTGTACAAAGGGTACATCAATGACGGTGCAACACCCGTGGCCATCAAGAGGCTCAAACAGGGTTCTCAGCAAGGTGTAAACGAGTTCCTCAACGAGATCGAGATGCTCTCTCAGCTTCGCCATCTTCACCTGGTGTCCCTCATTGACTACTGCTGCGAGAGAAACGAGATGATCCTGGTCTACGATTTCATGACACGTGGCACCTTGCGGGATCATCTGTACAACACCAGCGATAATCCTTCGCTTTCTTGGAAGCAGAGACTTGAGATATGCATAGGAGCTGCGCATGGGTTGCATTACCTCCATATAGGCGCGAAGCACATGATCATTCACCACGACATCAAGAGTACTAACATCTTGTTGGATGAGAGGTGGGTTGCCAAGGTTTCTGATTTCGGGTTATCGAGAGTTGGGCCTACGGGTACAGCCGCAACACACGAACAAGTGTCGCTTGTTGATTGGGCGAGGCGGTGCTATGATGCGGGTAGCCTTGGTAAGATTGTGGACCCTAAATTGAAGGGTGAGATTGCATCTGAGTGCTTGAAAAAGTTTGGTGATCTTGCCATGAGTTGTTTGCATGATGATGGGACTCAAAGGCCTTCCATGAACGACGTCGTTGGGGTCCTTGAGTTTGTTCTGCAGCTTCAAGAGAATTCATCCATTGGAGGTGGGAGTTCTGAGGTGTTTATTAGTAGTAGCAGCATAAGTGATGGAGCTCATGCTTGGGATAATAATAGTAAGAATAGTGGAGTGAGCATGACAACAACTACCACAATTACTAGCACTGAGAGTAGTAGAGAAACACAATGGTTAATGTCTGAGAATGTTTTCTCAGAGATTGGGGACCCTAAAGGACGGTGA 1485 0.4707 MLRLHFCELDPVIQIPGDRVFYIYIQDQMVDDHADVLMWTNGQRGVPIVKDYAVIVPSDNQKNANISLKMHPSPRTGYVDVVLNGLELFKINDSRGNLARPNPDPRPKAPSGNPEVFSSKNNTPTAAVAGAVSGAILLSVIVVSIFFLMKRWRRKSGEGDYYNSLKHKSEGSSQLPTNLCCHFSIEEIRTATNNFDELFVIGAGGFGNVYKGYINDGATPVAIKRLKQGSQQGVNEFLNEIEMLSQLRHLHLVSLIDYCCERNEMILVYDFMTRGTLRDHLYNTSDNPSLSWKQRLEICIGAAHGLHYLHIGAKHMIIHHDIKSTNILLDERWVAKVSDFGLSRVGPTGTAATHEQVSLVDWARRCYDAGSLGKIVDPKLKGEIASECLKKFGDLAMSCLHDDGTQRPSMNDVVGVLEFVLQLQENSSIGGGSSEVFISSSSISDGAHAWDNNSKNSGVSMTTTTTITSTESSRETQWLMSENVFSEIGDPKGR 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03420 494 ProSitePatterns Serine/Threonine protein kinases active-site signature. 317 329 IPR008271 GO:0004672|GO:0006468
Aip04g03420 494 SMART serkin_6 195 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g03420 494 MobiDBLite consensus disorder prediction 94 120 - -
Aip04g03420 494 PANTHER OS07G0166700 PROTEIN 355 465 IPR045272 GO:0004714|GO:0006468
Aip04g03420 494 PANTHER OS07G0166700 PROTEIN 1 354 IPR045272 GO:0004714|GO:0006468
Aip04g03420 494 SUPERFAMILY Protein kinase-like (PK-like) 172 420 IPR011009 -
Aip04g03420 494 PANTHER CARBOHYDRATE-BINDING PROTEIN OF THE ER PROTEIN 1 354 - -
Aip04g03420 494 Gene3D Transferase(Phosphotransferase) domain 1 272 351 - -
Aip04g03420 494 Gene3D - 1 91 - -
Aip04g03420 494 Gene3D Phosphorylase Kinase; domain 1 180 271 - -
Aip04g03420 494 ProSiteProfiles Protein kinase domain profile. 195 494 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g03420 494 ProSitePatterns Protein kinases ATP-binding region signature. 201 224 IPR017441 GO:0005524
Aip04g03420 494 Gene3D Transferase(Phosphotransferase) domain 1 352 433 - -
Aip04g03420 494 Pfam Protein tyrosine and serine/threonine kinase 200 346 IPR001245 GO:0004672|GO:0006468
Aip04g03420 494 Pfam Malectin-like domain 1 91 IPR024788 -
Aip04g03420 494 PANTHER CARBOHYDRATE-BINDING PROTEIN OF THE ER PROTEIN 355 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03420 Aip-Chr4 128771475 128773059 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03420 1 494 Receptor kinase-like Gene Family AT3G51550 43.633 8.56e-135 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Aip04g03420 PK_Tyr_Ser-Thr 3.9e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03420 - - gmx:100305394 578.556