Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03408 ATGAATAACAATAATAGTCCAAAAGACCCATCAGATTTTCCACTAAAACAAGAGAGTAGTGATCATCATCAACATGAAAAGGCATCATCAGCAGCAGCAGCAGCAAAGGCTGCTTCATCATCATCATCATCATCACAATGGCTAAGGTTGAAGGATCCAAGAATTGTTAGGGTATCAAGAGCATTTGGAGGAAAAGACAGGCACAGCAAGGTTTGCACAATAAGAGGGTTGAGAGACAGGCGTGTGAGGCTTTCAGTTCCAACAGCAATTCAGCTCTATGATCTTCAAGATAGGTTAGGGCTTAATCAACCTAGTAAGGTTGTTGATTGGTTGTTAAATGCTGCTAAGCATGAAATTGATGAGCTTCCACCTTTGCCACATATTAATAATCCCTTCACTACCCTTGGTGGTTTTCCATCATCATCTTCTAATTCTATGATCAATAATACTAATGAAGCTAGCACCTCAATGTTCAATATCAATAGGAGCATTCATCAGTGGCAGCAAGGTTTAGCACAGAATTATTCTAAGTGGAATAACAAGTCAAAGTCATCATCATCTACTAAACAAGCTTCATCAGAAGATAATCAAATGGTTAATGAAGAGGATAATAACAATAACAAGGAAGAGGAGGAAGGTGAAGAAGAAGGTGCAAATGTTGTTTCTACTACAAATCATCATCATCATCCTTCATTCCTAGGTTTGCTGAATACTATGCCAATTGGTAACTACCAATTTGAGCAACATAACTCATCAAATGATGTTAATGTTGCTCAATTGGGAAACCATAATCATGGATTTATTACAAACCAAACAGATTTGCAAAGCATTAATGTTGTGCCTTTTCCATCAACATTGTCCTTATCAACCGGTGGGAACAATATAACACAGTCATACTTCCCTTCACATTCATCAGAAGCAATGGATCCAAGACAAGAACAACAAATCAATCATCATCATCAGTATCATCAGATGTTGTCCTCTCATCATCTTCATCAAAATCTCTTGACAAATAATCTTCCATCTTTCAGCTTGGCTATGATGAGCACTCCAATCCTTCTCCACCATTCTCACAACACAAGAGAAAGTAGTCATCATCAATCTCATCACAAAGATCAACATTTTCCTTCTTCCAAGTGA 1140 0.3763 MNNNNSPKDPSDFPLKQESSDHHQHEKASSAAAAAKAASSSSSSSQWLRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLPHINNPFTTLGGFPSSSSNSMINNTNEASTSMFNINRSIHQWQQGLAQNYSKWNNKSKSSSSTKQASSEDNQMVNEEDNNNNKEEEEGEEEGANVVSTTNHHHHPSFLGLLNTMPIGNYQFEQHNSSNDVNVAQLGNHNHGFITNQTDLQSINVVPFPSTLSLSTGGNNITQSYFPSHSSEAMDPRQEQQINHHHQYHQMLSSHHLHQNLLTNNLPSFSLAMMSTPILLHHSHNTRESSHHQSHHKDQHFPSSK 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03408 379 MobiDBLite consensus disorder prediction 14 29 - -
Aip04g03408 379 MobiDBLite consensus disorder prediction 177 234 - -
Aip04g03408 379 Pfam TCP family transcription factor 64 209 IPR017887 -
Aip04g03408 379 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 17 371 IPR005333 GO:0003700
Aip04g03408 379 PANTHER TRANSCRIPTION FACTOR TCP2-LIKE 17 371 - -
Aip04g03408 379 MobiDBLite consensus disorder prediction 177 200 - -
Aip04g03408 379 Coils Coil 191 211 - -
Aip04g03408 379 ProSiteProfiles TCP domain profile. 64 122 IPR017887 -
Aip04g03408 379 MobiDBLite consensus disorder prediction 358 379 - -
Aip04g03408 379 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03408 Aip-Chr4 128677699 128680233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03408 47 312 TCP Transcription Factor Family AT3G02150 41.516 2.11e-49 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Aip04g03408 TCP 9.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03408 - - gmx:100816424 261.151