Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03398 CTCTAATTATCAGTGAGAAATTTCCAGCACTCAAATGTATAGTATTTGATCTTCCAATGGTTGTGGAAAGTTTGAAGGGATGCAACAATTTGAGCTTTGTTGGTGGAGACATGTTTGAATCCATTCCTAAGGCTGATGCAATTCTACTTAAGCTAGTCTTACATAATTGGAGTGACGACAATTGCATAAAAATATTGAAAAATTGTAAAGATGCTGTTAAGAATCCTAGACTCTTGGGTTTGTTTAATGATGCTATGGCCGGTGATTCTCAGATGATAAAGTTGGCACTAAAGGATCACAACATGGCCTTTGAGGGGTTGGAAACAATTGTGGATGTTGGTGGTGGAAATGGAACCACAGCTCTAATTATCAGTGAGAAATTTCCAGCACTCAAATGTATAGTATTTGATCTTCCAATGGTTGTGGAAAGTTTGAAGGGATCCAACAATTTGAGCTTTGTTGGTGGAGACATGTTTGAATCCATTCCTAAGGCTGATGCAATTCTACTTAAGCTAGTCTTACATAATTGGAGTGACGACAATTGTATAAAAATATTGAGAAACTGCAAAGATGCTGTTAAGGTTTCAAGTAAAGATAAAAAAGGGTAA 608 0.3651 LIISEKFPALKCIVFDLPMVVESLKGCNNLSFVGGDMFESIPKADAILLKLVLHNWSDDNCIKILKNCKDAVKNPRLLGLFNDAMAGDSQMIKLALKDHNMAFEGLETIVDVGGGNGTTALIISEKFPALKCIVFDLPMVVESLKGSNNLSFVGGDMFESIPKADAILLKLVLHNWSDDNCIKILRNCKDAVKVSSKDKKG 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03398 201 PANTHER O-METHYLTRANSFERASE 2 75 IPR016461 GO:0008168
Aip04g03398 201 PANTHER O-METHYLTRANSFERASE 73 199 IPR016461 GO:0008168
Aip04g03398 201 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 201 IPR016461 GO:0008168
Aip04g03398 201 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 3 73 IPR029063 -
Aip04g03398 201 Gene3D Vaccinia Virus protein VP39 76 200 IPR029063 -
Aip04g03398 201 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 73 193 IPR029063 -
Aip04g03398 201 Pfam O-methyltransferase domain 3 73 IPR001077 GO:0008171
Aip04g03398 201 Pfam O-methyltransferase domain 78 194 IPR001077 GO:0008171
Aip04g03398 201 Gene3D Vaccinia Virus protein VP39 2 74 IPR029063 -
Aip04g03398 201 PANTHER FLAVONOID 4'-O-METHYLTRANSFERASE 2 75 - -
Aip04g03398 201 PANTHER FLAVONOID 4'-O-METHYLTRANSFERASE 73 199 - -
Aip04g03398 201 CDD AdoMet_MTases 108 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03398 Aip-Chr4 128523511 128581160 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03398 2 72 Monolignol Biosynthesis Gene Families AT5G54160 49.296 7.44e-19 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03398 K22588 - ahf:112740688 171.4