Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03395 ATGACTTCAAACAATGGGCGCAGCGCAAGTGAGAGCTTCAAAGCTCAAGCACTTGTTTATAGGCACATGTTTAGCATCCTAGACTCTATGTGTCTCAAGTGGATCATTGACTCTCGCATACCAAACATAATCCACGACCATGGAAAACCTATTACTCTTTTAGAATTGGTCTCCGTTCTCAAAATTCCATCAACTAAAGTTGAACGCATTCATGTTTTCATGTGCTACATGGCGTATATTGGATACTTTGATATAACAAAGGTTAGAATCCATGGCGACAATGATGGCAGTAATCAAGAAGAAGAAAAGGAAGCATTTGCTCTCACAGCAGCATCAGAACTCTTGATCAAAGGCACTGAAAACCCTTGTATAGCTCCATTGGTTGAGTTCGTTATGGATCCACTTATTTCAGATTCCTTCAATTATCTGAGCAAGTGGTTTTCCGACGAAAATCGCCGTCTATACGAAATCATCTCGGGGACACCTTGGTGGGAGTTTCTTGATAAGAATCCAAGACTCTTGGGTTTGTTCAATGATGCTATGGCCAGTGATTCTCAGATGATAAAGCTGGCACTAAAGGATCATAACATTGCCTTTGAGGGGGTGGAAACAATCGTGGATGTTGGTGGTGGAACTGGAACCACTGCTCAAATTTTCAGTGAGAAATTTCCGGAACTCAAATACATAGTATTTGATCTTCCACAGGTTGTGAAAAATCTGAAGGGATGCAACAATTTGAGCTTTGTCGGTGGAGACATGTTTGAATCCATTCCTAAGGCTGATGCAATTCTACTTAAGTCAGTCTTACATAATTGGAGTGACGACAATTGCATACAAATATTGAAAAATTGTAAAGATGCTGTTAAGATTTTAAGGAAGGATAAAAAAGGGGTGTACACGGTCCGGTCCGACCCGAAAACTCGGCCCGAGCTTGAAGGATTTTGGGGTATATTGGCTCGGATCCGAAGTGGCCCGAGACCGACCCGAAAAAAAGTAATGAAACCAAAAGGAGTTCACGCAATACACAAGCCTCAGTGCCTCACTGCCTCTGACCCTTTGTGTCTCACAAGCCTTCTCCCTGACTCTGCCACAGTCCCACCCTCAGAGCTCAGTCTCCTCTCATCCCTTCCCCGCAGGCCCTGA 1143 0.4348 MTSNNGRSASESFKAQALVYRHMFSILDSMCLKWIIDSRIPNIIHDHGKPITLLELVSVLKIPSTKVERIHVFMCYMAYIGYFDITKVRIHGDNDGSNQEEEKEAFALTAASELLIKGTENPCIAPLVEFVMDPLISDSFNYLSKWFSDENRRLYEIISGTPWWEFLDKNPRLLGLFNDAMASDSQMIKLALKDHNIAFEGVETIVDVGGGTGTTAQIFSEKFPELKYIVFDLPQVVKNLKGCNNLSFVGGDMFESIPKADAILLKSVLHNWSDDNCIQILKNCKDAVKILRKDKKGVYTVRSDPKTRPELEGFWGILARIRSGPRPTRKKVMKPKGVHAIHKPQCLTASDPLCLTSLLPDSATVPPSELSLLSSLPRRP 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03395 380 SUPERFAMILY "Winged helix" DNA-binding domain 10 118 IPR036390 -
Aip04g03395 380 CDD AdoMet_MTases 204 289 - -
Aip04g03395 380 Gene3D Vaccinia Virus protein VP39 118 300 IPR029063 -
Aip04g03395 380 PANTHER O-METHYLTRANSFERASE 3 296 IPR016461 GO:0008168
Aip04g03395 380 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 121 289 IPR029063 -
Aip04g03395 380 Gene3D - 1 115 IPR036388 -
Aip04g03395 380 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Aip04g03395 380 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 360 IPR016461 GO:0008168
Aip04g03395 380 PANTHER FLAVONOID 4'-O-METHYLTRANSFERASE 3 296 - -
Aip04g03395 380 Pfam O-methyltransferase domain 140 289 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03395 Aip-Chr4 128469373 128481359 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03395 30 288 Monolignol Biosynthesis Gene Families AT5G54160 29.119 1.16e-31 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03395 K22588 - ahf:112740688 523.087