Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03393 ATGACTTCAATCAATGGCCGCAGCGCAAGCGAGAGCTTCAAAGCTCAAGCACTTGTTTATAGGCACATGTTTAGCATCCTAGACTCCATGTGTCTCAAGTGGATCATTGACTCTCGCATACCAAACATAATCCACGACCATGGAAAACCTATTACTCTTTTAGAATTGGTCTCCGTTCTCAAAATTCCATCAACTAAAGTTGATCGCATTCATGTTTTCATGCGCTACATGGCGTATATTGGATACTTTGATATAGTTAGAATGCATGGCGACAATGATGGCAATAATCAAGAAGAAGAAACGGAAGTATTTGCTCTCACAGCAGCATCAGAACTCTTGATCAAAGGCACTGAAAACCCTTGTATAGCTCCAATGGTGGAGTTTATATTAGATCCAGTTCATTCAAATTTCTTCAATTATCTGAGCAAGTGGCTTTCCGACGAAAATCGCCGTCTATACGAAATCACCTCGGGGACACCTTGGTGGGAGTTTCTTGATAAGAATCCAAGAATCTTGGGTTTGTTCAATGACGCTATGGCCGGTGATTCTCAGATGATAAAGCTGGCACTAAAGGATCATAACATGGCCTTTGAGGGGGTGGAAACAATCGTGGATGTTGGTGGTGGAACTGGAACCACCGCTCAAATTTTCAGTGAGAAATTTCCGGAACTCAAATATATAGTATTTGATCTTCCACAGGTTGTGAAAAATCTGAAGGGATGCAACAATTTGAGCTTTGTCGGTGGAGACATGTTTGAATCCATTCCTAAGGCTGATGCAATTCTACTTAAGCTCCTTCTCTGCTTCACGCCGTTTTCACGCCACCACCACTCGCCATCGCCCTTCTCCTTCGTCTTCACATTTGCTCACCCCCACTCACCGTCGCTCTTATCCTTTGTCTTCTCACCATCGCTCACCACTCACCGCGCCGCTCCTCATCTTCACCTTCGCTCACCACTCACCATCACCACTCCTCATCTTCGTCGCTCACCACTCACCGAGACATTGAAGTTCTTCTCTCTCTCAAAGAAAAACCCTAGCCGCTGTTCTCTTTTTCAAGCTGTGTCACCGCCGCTGAATCTGGTCCAGCCGCCGTCCCCGCTCCTACTGCTCCAGCGCCATCGCAACTTGTCTTTATCATTGCGTTGCGTCGCCTCTGTTCCACTGCCGTTGTTTGTTCCAGTTCCGTCGCCTGTGCTCCACTGCTCCCTCTCCCTCATCTTGATTTGA 1230 0.465 MTSINGRSASESFKAQALVYRHMFSILDSMCLKWIIDSRIPNIIHDHGKPITLLELVSVLKIPSTKVDRIHVFMRYMAYIGYFDIVRMHGDNDGNNQEEETEVFALTAASELLIKGTENPCIAPMVEFILDPVHSNFFNYLSKWLSDENRRLYEITSGTPWWEFLDKNPRILGLFNDAMAGDSQMIKLALKDHNMAFEGVETIVDVGGGTGTTAQIFSEKFPELKYIVFDLPQVVKNLKGCNNLSFVGGDMFESIPKADAILLKLLLCFTPFSRHHHSPSPFSFVFTFAHPHSPSLLSFVFSPSLTTHRAAPHLHLRSPLTITTPHLRRSPLTETLKFFSLSKKNPSRCSLFQAVSPPLNLVQPPSPLLLLQRHRNLSLSLRCVASVPLPLFVPVPSPVLHCSLSLILI 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03393 409 CDD AdoMet_MTases 202 276 - -
Aip04g03393 409 Gene3D Vaccinia Virus protein VP39 116 275 IPR029063 -
Aip04g03393 409 Gene3D - 1 113 IPR036388 -
Aip04g03393 409 SUPERFAMILY "Winged helix" DNA-binding domain 10 116 IPR036390 -
Aip04g03393 409 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Aip04g03393 409 Pfam O-methyltransferase domain 138 267 IPR001077 GO:0008171
Aip04g03393 409 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 119 270 IPR029063 -
Aip04g03393 409 PANTHER FLAVONOID 4'-O-METHYLTRANSFERASE 2 267 - -
Aip04g03393 409 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 267 IPR016461 GO:0008168
Aip04g03393 409 PANTHER O-METHYLTRANSFERASE 2 267 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03393 Aip-Chr4 128410098 128417454 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03393 95 267 Monolignol Biosynthesis Gene Families AT1G51990 29.310 2.05e-20 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03393 K22588 - ahf:112740688 481.1