Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03392 ATGTCTGCCTGTTGTGGAAGCACTCCAGGGGACAACAATGCAACAATTTCAAACTCCACAAAATTTCAGGGTGCGGATGCAATTCTCTCCTTTGAAAAGTTGCATCCAAAAAAAGTTCAGGAGAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGCAAAGCTGGTGCTCTTGGTGATTCTGTCACTGTCTCCCGTGAGAAGAACAAGAGAGGATTAAGTTCTGGATATAAGTTCTGGATATATTATAATCAGTTCATATATACAAAATCCACCAATATCATGGTTTTGCAGATTGACGAAGAGCTTCTTCAGGAAGTGGTTAATATGGGATTTGACAAAAATCAATTGGTTGAATCTTTATGCAACAGGATCCAAAATGAAGTCTGTGCCCTTCATTTCAGTCGGAATCAGTTGCGCTCAATGGGAGAAGCCAAGAATTTGCTTCAATATATGTTCAATTCAGTCGTAGATGTTAGGTGCTCTATTTGA 489 0.3967 MSACCGSTPGDNNATISNSTKFQGADAILSFEKLHPKKVQEKFLQERIKVGGKAGALGDSVTVSREKNKRGLSSGYKFWIYYNQFIYTKSTNIMVLQIDEELLQEVVNMGFDKNQLVESLCNRIQNEVCALHFSRNQLRSMGEAKNLLQYMFNSVVDVRCSI 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03392 162 CDD UBA_SnRK1_plant 98 128 - -
Aip04g03392 162 Gene3D - 11 121 IPR038526 -
Aip04g03392 162 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 97 137 IPR015940 -
Aip04g03392 162 Pfam Ribosomal L22e protein family 38 70 IPR002671 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03392 Aip-Chr4 128408666 128409891 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03392 41 78 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 71.053 1.52e-11 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03392 K02891 - ahf:114925841 70.4774