Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03368 ATGGCTACGTCTCGTTGTTTGGTTCCTTTGGTCATTTTCATGTATTCCTTAGCCATTTCAGGTGCCATTGATGGTAATTGGTATGATGCTCATGCAACATTCTATGGTGACATACGAGGTGGAGAAACCATGAATGGTGCATGTGGATATGGGAATTTATTTGAACAAGGGTATGGACTTGCAAACACAGCACTAAGCACTGCTCTATTCAACCGTGGACTAACATGTGGTGCATGTTTTGAGATCCAATGTGTGAATGATCCACAATGGTGTATTAAGGGTGCAGGAACAATCAAAGTAACAGCAACAAATTTTTGTCCTCCAACTAACGAAAAAGGTCGTCCACCATGGTGTAACCCTCCACAAAAGCACTTCGATTTGTCCATGAAAATGTTCACAACAATAGCAAACTACAAAGCAGGGATAATCCCAGTTCGTTATAGGCGCACTCCGTGCATTAAACATGGTGGTGTCAGGTTTGAGTTGAAGGGTAACCCTCATTGGTTGCTAGTGTTGGTTTTTAATGTTGCAAATGCTGGTGATGTTACAAATGTTAAAATATCAGGTTCAACCGCACGTGCATGGATTCCTATGACACGTAATTGGGGGCAAAATTGGCAAACTGGTACTCCATTGGCTGGACAAGCATTGTCTTTTATGGTTACAACAAGTGATGGCAAAACGTTGACGTTTAGTAATGTTGCTCCTCCCAATTGGCGACTTGGACAAAGTTTTCAGGCCGCAACCAACTTTTAG 756 0.422 MATSRCLVPLVIFMYSLAISGAIDGNWYDAHATFYGDIRGGETMNGACGYGNLFEQGYGLANTALSTALFNRGLTCGACFEIQCVNDPQWCIKGAGTIKVTATNFCPPTNEKGRPPWCNPPQKHFDLSMKMFTTIANYKAGIIPVRYRRTPCIKHGGVRFELKGNPHWLLVLVFNVANAGDVTNVKISGSTARAWIPMTRNWGQNWQTGTPLAGQALSFMVTTSDGKTLTFSNVAPPNWRLGQSFQAATNF 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03368 251 Gene3D - 157 251 IPR036749 -
Aip04g03368 251 PANTHER EXPANSIN-A15 17 251 IPR002963 GO:0009664
Aip04g03368 251 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Aip04g03368 251 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Aip04g03368 251 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Aip04g03368 251 PRINTS Expansin/Lol pI family signature 140 156 IPR007118 GO:0005576
Aip04g03368 251 PRINTS Expansin/Lol pI family signature 195 209 IPR007118 GO:0005576
Aip04g03368 251 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576
Aip04g03368 251 Pfam Expansin C-terminal domain 158 236 IPR007117 -
Aip04g03368 251 PANTHER EXPANSIN-A21-RELATED 17 251 - -
Aip04g03368 251 Gene3D - 15 152 IPR036908 -
Aip04g03368 251 SUPERFAMILY PHL pollen allergen 154 246 IPR036749 -
Aip04g03368 251 Pfam Lytic transglycolase 63 147 IPR009009 -
Aip04g03368 251 SUPERFAMILY Barwin-like endoglucanases 26 175 IPR036908 -
Aip04g03368 251 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Aip04g03368 251 PRINTS Expansin signature 84 95 IPR002963 GO:0009664
Aip04g03368 251 PRINTS Expansin signature 98 108 IPR002963 GO:0009664
Aip04g03368 251 PRINTS Expansin signature 115 132 IPR002963 GO:0009664
Aip04g03368 251 PRINTS Expansin signature 132 145 IPR002963 GO:0009664
Aip04g03368 251 PRINTS Expansin signature 156 168 IPR002963 GO:0009664
Aip04g03368 251 PRINTS Expansin signature 168 189 IPR002963 GO:0009664
Aip04g03368 251 PRINTS Expansin signature 204 225 IPR002963 GO:0009664
Aip04g03368 251 PRINTS Expansin signature 233 249 IPR002963 GO:0009664
Aip04g03368 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 157 IPR007112 -
Aip04g03368 251 SMART dpbb_1 62 147 IPR007112 -
Aip04g03368 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 167 247 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03368 Aip-Chr4 128034562 128035993 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03368 20 251 Expansin Gene Family AT5G39270 63.793 1.16e-108 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03368 - - qsu:112027340 369.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g03368 04 128034562 128035993 Aip04g03368 04 128034562 128035993 ECH