Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03363 ATGTTTATGTTTTCGTCCTCCATAACCAAACCCCTTACCCCTTTCTATTCTTATGCAAACGAAATTGAAATCCCTAATCATAACAAAATCCTTAGCATCATCATAGCCATAGCCATGGACTACACCACTTGGCCTGAATTTCAGCATGCCCAAACCCAAACCCCAACACTACCCTCTTCATCTTCATTATATTCATACTCATACCCTCCTCTTCCATCTTCATCATCGTACACCGCCAATTTCGTCCCTTACCCTCAAAACCCTAACCCTCCTTCTTCAATTCCTCCCAACACTGTTTTAGAACCTGTGGTCAACCCTCCGGGTGTTGATTCCTATGTTCCTCCATTGCCATTGCCAACAACCCAAGTTGTTGGTGGTCCTGAACAACTTCTTCCCCAAAATTACTCATACACCCAAACCCAAACCCAAATTGTGGGTAATGACCCTAATTCGTTGGTGGCTTCTTCTGGGTACTACTATGATCCCAATGCTCAAAATTGGGGTGATACTGCTGGAGGAGCTGTTATACAATATGGTTCTGACCCTCTTGCTTATGGAGATGTGATCTCTATGGCATCAAATGGCACAGAACAGTTGGCTGTTGCAAATACTAATCCCGCTGCATGGTGGACCAATACAGCTATGCAAGTTCAAGCACAACCTCTTGGCAATAATAAATGGAAGCAGCTGCTGAAGAAGAAACCTAAAACTGTGAATGTTCAACCTGCATATTGCGAAGTTTGCAAGATAGATTGCACCAGCAAAGAGGTATTGGATCAACATAAATTAGGAAAGAAGCACAAGAAGAACGTAGAGAAACTAAGAGAATTATTAAGACCACCCCAGCCACAAGTCCATCCACCGGCCGATGGGTCATCTAATCCGGTTATAGGGCCACAATTGTGGAATAAGTGTAAGAGGAAATCAATTGAAACTCCAGAGAATCTGGAGAAAAAGAAGAAGAAAGTTCTCGAAGGAGGAGCAGCGGCCGCAGCAGTTAAAGTATGTTCTATATGTAATGTGGTATGTAATAGTGAAACAGTTTATAATTTCCACCTTCGCGGACAAAAGCATGCTGCCATGTTGAAGAAAGCATCTGAAAATATACTATCCAATGGAAAATGA 1125 0.4249 MFMFSSSITKPLTPFYSYANEIEIPNHNKILSIIIAIAMDYTTWPEFQHAQTQTPTLPSSSSLYSYSYPPLPSSSSYTANFVPYPQNPNPPSSIPPNTVLEPVVNPPGVDSYVPPLPLPTTQVVGGPEQLLPQNYSYTQTQTQIVGNDPNSLVASSGYYYDPNAQNWGDTAGGAVIQYGSDPLAYGDVISMASNGTEQLAVANTNPAAWWTNTAMQVQAQPLGNNKWKQLLKKKPKTVNVQPAYCEVCKIDCTSKEVLDQHKLGKKHKKNVEKLRELLRPPQPQVHPPADGSSNPVIGPQLWNKCKRKSIETPENLEKKKKKVLEGGAAAAAVKVCSICNVVCNSETVYNFHLRGQKHAAMLKKASENILSNGK 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03363 374 Pfam Zinc-finger of C2H2 type 244 267 - -
Aip04g03363 374 Pfam Zinc-finger of C2H2 type 335 358 - -
Aip04g03363 374 SUPERFAMILY beta-beta-alpha zinc fingers 239 275 IPR036236 -
Aip04g03363 374 Gene3D Classic Zinc Finger 228 277 - -
Aip04g03363 374 Gene3D Classic Zinc Finger 310 366 - -
Aip04g03363 374 PANTHER ZINC FINGER RNA-BINDING PROTEIN 83 366 - -
Aip04g03363 374 SMART ZnF_U1_5 240 274 IPR003604 GO:0003676|GO:0008270
Aip04g03363 374 SMART ZnF_U1_5 331 365 IPR003604 GO:0003676|GO:0008270
Aip04g03363 374 PANTHER - 83 366 - -
Aip04g03363 374 SUPERFAMILY beta-beta-alpha zinc fingers 333 364 IPR036236 -
Aip04g03363 374 SMART c2h2final6 243 267 IPR013087 -
Aip04g03363 374 SMART c2h2final6 334 358 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03363 Aip-Chr4 128008118 128009811 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03363 245 374 C2H2 Transcription Factor Family AT5G61190 30.405 4.24e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03363 - - ahf:112797844 624.394