Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03352 ATGTTGAATTTTTGTTCTTTTATTAGGTGTATTGCTCGACTATTCAACTCTCAATCCCACAATTCAAGCGGCTCCAACAGAGGAGATAGTACTACCAGCAGCGATACTGTGGCTGATGACAATCCTGTCGCAGGACCGGTGGAGTGTTACGCTTGCACGCAAGTAGGCGTGCCGGTGTTCCACTCCACCAGCTGCGACGGCTTTCACCAGCCACAATGGGAGGCTTGTGCGGGATCCTCCCTCGTTCCAATCCAGAACCGGTCCAAAAAGGCTCCGACTGTTCGGACAAGAATTCAGTCGGGGCCTTTCGGACAGGTTCTGGACCCGAGGAGCAAGCGTGTGCAAGTATGGAACCGGGCTCTATTGCTAGCGCGTGGAGTGGCGCTGGCAATTGACCCGTTGTTCTTCTACGCGCTCTCCATCGGGAGGGAAGGGTCGCCGTGCCTGTACATGGACGGAGGGCTGGCGGCGATGGTGACGGTGGCGCGGACGTGTGTGGACGCGGTGCATCTATTCCACGTGTGGCTGCAGTTCAAGGTGGCGTATGTTTCGAGGGAGTCGATGGTTGTCGGGTGCGGGAAGCTTGTATGGGACGCGCGTGCAATCGCGTCGCACTACCTGCGATCGATGAAGGGATTTTGGTTCGATGCCTTTGTAATTCTGCCAGTTCCGCAGGCTGTGTTTTGGTTGATAGTACCAAAATTGATAAGAGAAGAGAAAATCAAGGTCATTATGACCATATTGCTCTTAATTTTCTTGTTCCAATTTCTCCCAAAGGTTTACCATAGCATCTGCATGATGAGAAGAATGCAGAAAGTCACAGGATACATCTTTGGAACCATTTGGTGGGGTTTTGGCCTTAATCTCATAGCCTACTTCATTGCTTCACATGTAGCTGGAGGGTGCTGGTATGTTCTTGCGATTCAACGAGTGGCGTCGTGCATCCGGCAACAATGCGAAAGAACAATGGGATGTAACCTGTCTCTGTCCTGCTCTGAGGAGGTATGCTACCAGTTTCTGTTGTCATCATCAGGGACAGTTGGAGGTTCATGTAATAATGGAAATGGAAACTCAACAACAGTTGTGGTTAGAAAGCCTTTGTGTTTAGATGTTGATGGCCCTTTCAGATATGGAATCTACCAATGGGCACTTCCTGTGATTTCAAGCAATTCTCTGGCTGTCAAGATTCTGTATCCCATTTTTTGGGGTTTGATGACACTTAGCACTTTTGGTAATGATCTTGAGCCAACAAGTAACTGGTTAGAAGTGATTTTCAGTATCTGCATTGTGCTCAGTGGATTGCTGCTATTCACTTTGTTGATTGGTAACATTCAGGTGTTTTTGCATGCTGTGATGGCGAAGAAGAGAAAGATGCAGCTGAGGTGTCGCGACATGGAATGGTGGATGAGGAGGAGGCAGCTGCCTTCGCGATTAAGGCAAAGGGTTCGCCATTTCGAACGCCAGAGATGGGCAGCAATGGGAGGAGAAGATGAGATGGAATTGATCAAAGACTTGCCGGAGGGGCTAAGGCGAGAAATCAAGCGCCATCTTTGCTACGACCTTGTTAAAAAGGTACCTCTGTTCCACAATTTGGATGAGCTTATACTAttcccttggtttaatctgATAATTAGAGAAGGTGATCCAGTACCAAGGATGGTGTTCATCGTCCGAGGGCGAATAAAGCGCAACCAAAGCCTCAGCAAAGGAATGGTAGCATCTAGCATCCTTGAACCAGGAGGCTTTCTAGGGGATGAGCTTCTTTCATGGTGCCTTAGGCGGCCGTTCATCGACCGGCTTCCAGCTTCCTCGGCCACATTTGTGAGCCTTGAACCAACAGAAGCCTTTGGCCTTGATTGCAATCATCTTAGATACATCACTGATCACTTCAGATACAAGTTTGCCAATGAGAGGCTGAAGCGAACCGCGAGGTACTACTCATCCAATTGGAGAACTTGGGCTGCTGTCAACATTCAATTCGCCTGGCGGCGTTACAGGCAGAGGACTAGAGGTCCGGTGACCCCTGTAAGGGACAATGGTGGCGGAGGCGGCACAGAGCGCAGGCTCTTGCAGTATGCTGCAATGTTCATGTCAATAAGGCCACATGACCATCTTGAATGA 2121 0.4903 MLNFCSFIRCIARLFNSQSHNSSGSNRGDSTTSSDTVADDNPVAGPVECYACTQVGVPVFHSTSCDGFHQPQWEACAGSSLVPIQNRSKKAPTVRTRIQSGPFGQVLDPRSKRVQVWNRALLLARGVALAIDPLFFYALSIGREGSPCLYMDGGLAAMVTVARTCVDAVHLFHVWLQFKVAYVSRESMVVGCGKLVWDARAIASHYLRSMKGFWFDAFVILPVPQAVFWLIVPKLIREEKIKVIMTILLLIFLFQFLPKVYHSICMMRRMQKVTGYIFGTIWWGFGLNLIAYFIASHVAGGCWYVLAIQRVASCIRQQCERTMGCNLSLSCSEEVCYQFLLSSSGTVGGSCNNGNGNSTTVVVRKPLCLDVDGPFRYGIYQWALPVISSNSLAVKILYPIFWGLMTLSTFGNDLEPTSNWLEVIFSICIVLSGLLLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMRRRQLPSRLRQRVRHFERQRWAAMGGEDEMELIKDLPEGLRREIKRHLCYDLVKKVPLFHNLDELILFPWFNLIIREGDPVPRMVFIVRGRIKRNQSLSKGMVASSILEPGGFLGDELLSWCLRRPFIDRLPASSATFVSLEPTEAFGLDCNHLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRQRTRGPVTPVRDNGGGGGTERRLLQYAAMFMSIRPHDHLE 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03352 706 Pfam Ion transport protein 115 445 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Aip04g03352 706 Gene3D Jelly Rolls 525 632 IPR014710 -
Aip04g03352 706 MobiDBLite consensus disorder prediction 19 38 - -
Aip04g03352 706 ProSiteProfiles cAMP/cGMP binding motif profile. 543 626 IPR000595 -
Aip04g03352 706 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 48 706 - -
Aip04g03352 706 SUPERFAMILY cAMP-binding domain-like 454 630 IPR018490 -
Aip04g03352 706 CDD CAP_ED 543 626 IPR000595 -
Aip04g03352 706 Gene3D - 151 450 - -
Aip04g03352 706 Gene3D Helix hairpin bin 453 518 - -
Aip04g03352 706 SUPERFAMILY Voltage-gated potassium channels 108 448 - -
Aip04g03352 706 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 2-LIKE 48 706 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03352 Aip-Chr4 127856281 127862193 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03352 40 706 Ion Channels AT5G15410 77.372 0.0 1020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03352 K05391 - gmx:100798823 1172.53