Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aip04g03349 | ATGGACACAGAGAGTCCTGCAATATACAAGAAAACCTGTTTGGATTATTATTTCGACCAACCGATCCTATTAACTGGAGATGTACGTGTCATATTCTATGAGAAAATGATAGGAGGCCGTCTCTTCTATTGTTGTTTCAATACAGCTTTTGTTAAAAACAGCATGGTACAGCTGGGAATACAGGATTTGGACAAAGTTGGGAAGAAAGGAAGATCAATATGTGGAAGTGATTTTAGCTTGGAATTACTGTTTGGTCCTGCCAATTCATCAAGTGTATCCAATAGTGACAATGCTAGTATTGTTTCCTTGTGA | 312 | 0.3782 | MDTESPAIYKKTCLDYYFDQPILLTGDVRVIFYEKMIGGRLFYCCFNTAFVKNSMVQLGIQDLDKVGKKGRSICGSDFSLELLFGPANSSSVSNSDNASIVSL | 103 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aip04g03349 | 103 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 11 | 86 | IPR035892 | - | |
| Aip04g03349 | 103 | ProSiteProfiles | C2 tensin-type domain profile. | 1 | 87 | IPR014020 | - | |
| Aip04g03349 | 103 | Gene3D | - | 3 | 89 | - | - | |
| Aip04g03349 | 103 | PANTHER | PHOSPHATASE WITH HOMOLOGY TO TENSIN | 1 | 91 | - | - | |
| Aip04g03349 | 103 | PANTHER | BNAC03G16750D PROTEIN | 1 | 91 | - | - | |
| Aip04g03349 | 103 | Pfam | C2 domain of PTEN tumour-suppressor protein | 16 | 84 | IPR014020 | - | |
| Aip04g03349 | 103 | SMART | PTEN_C2_2 | 9 | 86 | IPR014020 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aip04g03349 | Aip-Chr4 | 127837561 | 127838352 | Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aip04g03349 | 1 | 87 | Protein tyrosine phosphatase (PTP) family | AT5G39400 | 66.667 | 2.05e-38 | 130 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aip04g03349 | K01110 | - | aip:110271340 | 206.068 |