Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03339 ATGTTAATCCAAGAAAACTCCAATGGACCTTCAAAGTTTATGTTGTGCACTTATGGGAAGTTCCAAACAAGTTCAACAAAAACGAAATCAATGGGTGGTAGAATCCAAGCTTCAATCCCAAAGCCATTAGTGAAGAAGTGGAGAGGCAGCATATTGGAGTTTAACATGTACGTCATGTCTAACTTCATTGTGGTGGATAAGAAAGAAAAAATCAGGACAACCAGGAATAGATGGACTATAAACTTTTCACAGAGAACCACTGTTATTCCGGTATCTCATCCAAGTTTTCCTCTAAAGGCATTTTCTTTTAAGCCAATCCCTGAGCTGCTGGCAGCTGAGAAGCTCGATGATTCATTACTTATAGATGTGATAGGTGAAGTTGTTGGAAAAGAAGATCCAAGAGAATTGATTACTAGCAAAGGCAAGGAGACAAAACGTTTGGCTGTTTTGATAGAGGACCTTGAAAATAACAGTATTGGTTGTGTGTTGTTTGGAGACATGGTAGATCAAATTCTACCCTATCTTAAAGAAGAAAGGGTTGAGCCTTTGATAGTTATAGCGCAGTGCTTTAAACCAAGCAGGTGGAATGAAAAAACATCAGTACAAAGTCATTTTGATTATTCAAAGTTACGTATTAATGCTGATCTGGAAGAGGTTAGAGTTTTCCGTGACAGGAGGCTTTCTGGGAAACCTGCAAACTCGGCTAGAATTAGTCAAGTGTCATCCCATGGTCCGCGTTCTGGTGCTGAGGAACTAAGGAGGGGAGAAGCCATTGTTAAAACTATAGAGGAAGAAGGGCCTGTATGGATTGCTGGTACAATAGTTTCAATAAACTCTGACAAGGATGATTGGTTTTATAAATCATGTCGAAAATGCCCGAAAAAAGTAGAAACTCCTATTGGAAACAGATATGAGTGTGGAAAATGTGGACATACTCATGGAGCTGCATCAGTTAGGTACAAAGTTGAGGTAATGGCATGTGATGGAACTGGGAGCATAGCATTGCTAATGTGGGATAGGGAGACAGTCCAGCTCTGTAGGAGGCAGGCGGACCAGATCAAGGATGAGGTTGTTTTGGGTGGAGATGGATACCCCCCAACTTTGGAAACAATGATGGATAGAAAGTTACTTTTCAAGGTTAATGTTAAATCTTCAAACATTAGACAATATGATCATATTTATACAGTCATGAAAATTTGTGATGATGAGAAAATTGTAAAGATGAATCCCCCAAAGGAAATTCAAAACTCCGACTTTGCTGCTGTAAATGAGAATGTGTGCAGTGACTCAATTGATGTGTCAGCAGTTGTGGCCAATATGCATAACAACACTGATTCTATTCTTACTTTGGATGATTTGGAAGAATGTGTCACCAGCCTTAAAGAGGAAACCCCAATTAAAAGAGCTGCCATGGGGGTAAAACATACTTTGACTATAAATGTTGACAATGAAAACGAAGTGGGATTTTCAACCAACAAATTTAGTCGAAAAGGTGGAAAAAGACAGAAGATACAAATTAGTGGGAGTGAAAATTGA 1536 0.3913 MLIQENSNGPSKFMLCTYGKFQTSSTKTKSMGGRIQASIPKPLVKKWRGSILEFNMYVMSNFIVVDKKEKIRTTRNRWTINFSQRTTVIPVSHPSFPLKAFSFKPIPELLAAEKLDDSLLIDVIGEVVGKEDPRELITSKGKETKRLAVLIEDLENNSIGCVLFGDMVDQILPYLKEERVEPLIVIAQCFKPSRWNEKTSVQSHFDYSKLRINADLEEVRVFRDRRLSGKPANSARISQVSSHGPRSGAEELRRGEAIVKTIEEEGPVWIAGTIVSINSDKDDWFYKSCRKCPKKVETPIGNRYECGKCGHTHGAASVRYKVEVMACDGTGSIALLMWDRETVQLCRRQADQIKDEVVLGGDGYPPTLETMMDRKLLFKVNVKSSNIRQYDHIYTVMKICDDEKIVKMNPPKEIQNSDFAAVNENVCSDSIDVSAVVANMHNNTDSILTLDDLEECVTSLKEETPIKRAAMGVKHTLTINVDNENEVGFSTNKFSRKGGKRQKIQISGSEN 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03339 511 CDD RPA1_DBD_B_like 122 226 - -
Aip04g03339 511 Gene3D - 19 93 IPR012340 -
Aip04g03339 511 SUPERFAMILY Nucleic acid-binding proteins 101 225 IPR012340 -
Aip04g03339 511 CDD RPA1_DBD_C 262 415 IPR013955 -
Aip04g03339 511 Pfam Domain of unknown function DUF223 32 95 IPR003871 -
Aip04g03339 511 SUPERFAMILY Nucleic acid-binding proteins 264 401 IPR012340 -
Aip04g03339 511 PANTHER BNAC07G49340D PROTEIN 24 407 - -
Aip04g03339 511 Pfam Replication factor-A C terminal domain 271 399 IPR013955 -
Aip04g03339 511 PANTHER REPLICATION FACTOR A 1, RFA1 24 407 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip04g03339 511 Gene3D - 231 408 IPR012340 -
Aip04g03339 511 Gene3D - 95 230 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03339 Aip-Chr4 127750085 127752569 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03339 32 338 Core DNA Replication Machinery Family AT2G06510 26.300 4.38e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03339 - - aip:107630584 646.736