Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03321 ATGTCCACCACCGACGCCAATTCAGCGGCGGCGCCGCCGCCGCAGTCATCTCGGCCAACCATAACCCTCCCTCCTCGACCCTCCGCCGAGGCCTTCTTCTCCGGTGCCGGCGCTGGCATCAGTCCAGGCCCCATGACTCTTGTCTCTAGCTTCTTCTCCGATGGCGGCGGTTCTGACTCCGACTACCGCTCCTTCTCTCAGCTTCTCGCCGGCGCCATGGCGTCCCCGCTTGCCTTTGGCGGAGCTTCCAGGCCTCCCTTTCCGCCCCCCGAGAATCCCGGCGAGAATTCCGGTGAGGAAGGAGCGCAGAAGAGCTTAGGGTTCAAGCAGAGTAGGCCCATGAACTTGGTGGTTGCTCGTTCTCCAATGTTCACTATCCCTCCAGGGTTGAGTCCTTCTGGGTTTCTCAATTCGCCGGGGTTCTTTTCCCCTCAGAGCCCCTTTGGGATGTCGCACCAACAAGCTTTAGCACAAGTTACTGCTCAAGCTGTGTTTGCTCAATCTCAAATGCATATGCAAGCTGACTATCAGGCGCCTGCAGTAACAGCTCCGACAGCTCCCGCAAATCTATCAGTAGAGCAGCCATCTTTTACTCAAAATGAAGCTTCGCAGCAACAAGTGGTACCATCTGTATCAGAACCCAGCAATGCTCAAGTGGAAACATCGGATATTTCGAACACTGATAATAAGAAATATCAACCATCTTCCATGGTCATTGACAAACCTGCAGATGATGGTTACAACTGGCGTAAGTATGGGCAGAAGCAGGTTAAGGGGAGCGAGTTTCCACGGAGCTACTACAAGTGTACACATTTGAATTGCCCTGTTAAGAAAAAGGTTGAGCGTGCCCCCGATGGTCACATAACTGAAATTATCTATAAAGGCCAGCATAACCATGAAAAGCCTCAGGCAAATAGGCGTGTAAAAGAAAATAATGATTCAAATGGAAATTCAAATGTTCCACCCAAGTCTGAGTTGACTTCTCAGGGTTGGGTTGGAAATGCAACTAAGGTTGCAGAAAGCATGCCTGATTGTTCGGTTCCTGAGAGTGACCAGACCTCCAATCAAGGGGCAAGTAGGTTACCTGGATCAAGTGAGAGTGAGGAAGTGGGTAATGTGGATAATAGGGAAGAGGGAGATGATGGTGAGCCTAACCCTAAGAGAAGGAACACCGAGGTTGCGGTTTCTGAAGTACCTCTATCGCAGAAAACCGTTACAGAACCCAAAATCATCGTGCAAACAAGAAGTGAAGTTGATCTTTTGGATGATGGCTACAGGTGGCGAAAGTATGGTCAGAAAGTGGTAAAGGGAAATCCTCATCCAAGGAGTTACTACAAATGCACTAGTGCCGGATGCAATGTGCGAAAGCACGTTGAGAGAGCTTCGTCGGACCCCAAAGCCGTCATAACTACTTACGAGGGAAAACATAATCACGATGTACCTGCTGCTAGAAGCAGTAGCCACAACACAGCGAGTAACAATTCAGTGCCTCTGAAACCGCATAATCCGGTGCCACAGAAGCATCCTCTACTTAAAGACATGGATTTCGGAAGCAATGACCAAAGACCGGTACATCTGCGTTTAAAAGAAGAGCAAATCATAGTGTAA 1608 0.4969 MSTTDANSAAAPPPQSSRPTITLPPRPSAEAFFSGAGAGISPGPMTLVSSFFSDGGGSDSDYRSFSQLLAGAMASPLAFGGASRPPFPPPENPGENSGEEGAQKSLGFKQSRPMNLVVARSPMFTIPPGLSPSGFLNSPGFFSPQSPFGMSHQQALAQVTAQAVFAQSQMHMQADYQAPAVTAPTAPANLSVEQPSFTQNEASQQQVVPSVSEPSNAQVETSDISNTDNKKYQPSSMVIDKPADDGYNWRKYGQKQVKGSEFPRSYYKCTHLNCPVKKKVERAPDGHITEIIYKGQHNHEKPQANRRVKENNDSNGNSNVPPKSELTSQGWVGNATKVAESMPDCSVPESDQTSNQGASRLPGSSESEEVGNVDNREEGDDGEPNPKRRNTEVAVSEVPLSQKTVTEPKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERASSDPKAVITTYEGKHNHDVPAARSSSHNTASNNSVPLKPHNPVPQKHPLLKDMDFGSNDQRPVHLRLKEEQIIV 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03321 535 SUPERFAMILY WRKY DNA-binding domain 413 481 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aip04g03321 535 Pfam WRKY DNA -binding domain 422 478 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip04g03321 535 Pfam WRKY DNA -binding domain 244 300 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip04g03321 535 MobiDBLite consensus disorder prediction 309 335 - -
Aip04g03321 535 MobiDBLite consensus disorder prediction 198 234 - -
Aip04g03321 535 MobiDBLite consensus disorder prediction 1 37 - -
Aip04g03321 535 MobiDBLite consensus disorder prediction 1 16 - -
Aip04g03321 535 MobiDBLite consensus disorder prediction 483 500 - -
Aip04g03321 535 MobiDBLite consensus disorder prediction 292 398 - -
Aip04g03321 535 ProSiteProfiles WRKY domain profile. 416 481 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip04g03321 535 SUPERFAMILY WRKY DNA-binding domain 241 302 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aip04g03321 535 MobiDBLite consensus disorder prediction 198 248 - -
Aip04g03321 535 SMART WRKY_cls 421 480 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip04g03321 535 SMART WRKY_cls 243 301 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip04g03321 535 MobiDBLite consensus disorder prediction 478 520 - -
Aip04g03321 535 ProSiteProfiles WRKY domain profile. 244 302 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip04g03321 535 MobiDBLite consensus disorder prediction 80 102 - -
Aip04g03321 535 MobiDBLite consensus disorder prediction 346 369 - -
Aip04g03321 535 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 13 534 IPR044810 GO:0003700
Aip04g03321 535 PANTHER WRKY PROTEIN 13 534 - -
Aip04g03321 535 Gene3D WRKY domain 230 303 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aip04g03321 535 Gene3D WRKY domain 406 482 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aip04g03321 535 MobiDBLite consensus disorder prediction 292 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03321 Aip-Chr4 127620547 127625193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03321 17 533 WRKY Transcription Factor Family AT2G03340 54.291 6.14e-156 453
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Aip04g03321 WRKY 9.6e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03321 - - aip:107635357 1019.22