Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03319 ATGGGTTGTGTTAACTCCAAGAAGGCTCGTGCCGGAGATCCATCTGCTTCGCCGGCCGACGATGGCGTAGCATACGTCAAATCCTATTCGCGGAGAGGCAGACTCGCCTCCGGTCGCGTTGGGGCGGTGGTGTCTTCTTCCCCCGCTTCCAGGGGCCGTTCTTCGACCTCCGCGGTGGTTGCCGGTGAGGCTGCGGAGGTCCGGGAAGGAGGTGGTGACGCGAAACGCGACGAGGCGGCGGCTGCGGAGAAGCTTGAGAAGAAGAGTAGTAAGGATATGGTGGTGAGGGAGAATGGGAATGGGAATAATGGTGGGAGAGGGAGCTCGAGGCAAATTGGGGCATTGAATGCGAGGATTGGTTTGTCGCATAGGTTTGTGGAAGCTGAAAGCATTGCTGCTGGTTGGCCACCGTGGCTCACATCTGTTGCCGGTGAAGCCATTCACGGCATGGTTCCTCTCAAAAGTGATGCTTTTGAGAAATTGGACAAGATTGGACAAGGCACATACAGCAGCGTTTTCCAAGCACGTGAAGTTCATAGTGGGAGGATGGTTGCCTTGAAGAAGGTGCGCTTTGACAATTTCCAACCGGAGAGTATTAGGTTCATGGCAAGAGAGATTATAATCCTCCGTGCACTTGACCATCCAAACGTCATGAAATTGGAGGGCATAATCACTTCCCAACTTTCACACAGCATCTACCTTGTGTTTGAATACATGGAGCATGATCTTGCTGGCCTAGTATCTTCTCCGGACATCAAGTTCAGTGAATCACAGATTAAATGTTACATGAGGCAGCTATTAAGTGGCATGGAGCATTGTCACCTTAGAGGTATTATGCATAGAGACATTAAAGTTTCCAATATATTAGTGAACAATGACGGTGTTCTCAAGATTGGAGACTTTGGATTAGCAAATACACTTAGCCCAAACAACAAGAACCCTTTAACAAGTCGTGTGGTGACTCTTTGGTATCGCGCTCCGGAGCTCTTGATGGGTTCAACGAATTATGGAGTTTCAGTGGATCTATGGAGTGTCGGCTGCGTATTCGCAGAACTTTTCCTGGGGAAACCAATCCTTAAGGGAAGAAATGAGGTTGAACAATTGCACAGAATCTTTAAGCTTTGTGGATCTCCACCAGAAGAGTTCTGGAGAAAGTGTAAGCTTCCTCTTGCAACAATGTTTAAACCGCAGACTACCTACGAAAGCTCTCTTTGGGAGAGGTGTAAAGGTTTTCCTCCAACTGCTGTAAGCCTAATTGAGACTTTACTGTCCATTGATCCTTCCGAGCGTGGCACTGCCTCCTCTGCACTGATGTCTGAGTATTTTAGCACAAAGCCGCATGCTTGCAGTCCATCACTCCTTCCAAAGTATCCACCAAGCAAAGAAATGGATGCTAAATACCGGGATGATGCACAGAGGAAAAAGGTTGGAGTGGCTCGTGAGGCTGCGACGACAGCAAAAAGGCCAAAACGGGTCCAGAAAGTTTTGGATTGCCCCAACAATAATAATAAAACAGCTACAAAAGAGGAAATGCAGAACAATGCTCAAAATGGTGGCAGAGATGATAAAGTATATCAGACAAAGGGAAGAATCGGACTTGTGCAGCAGAAAGAGATGCAACATAAACCAATGTTTGATGCTAAGTCAGAGGCTGCCAAAACAAATGGTTCTCATGGCTATAGTGTATACTCAGGTCCGGCACCGGCCTCGGGATCTACCGGCTTTACTTGGGCTACTAAGAGGCGAAAAGATGCTGCTTCAACTTTATCAGATGGCTCAAGAAGTAAAATCAGTGGACTTGATCCAAACTTCGCCAAAGGAACATATGATTTAGCAAGACAAGGGATTGATGTTTCACAAAGAAATCGTAGTTACACAAACTTTCAAGATGAAACACATCAAGAATCATTTGATGGAGCTGATGAGTACTTGGATTATGATCCCACAGAAAAAGCAGATTCTATGATAAGTACTCAGGGCAACATTAATGAAGACTTGCATTTTGAGAATGGCATGAGAAGAGGAGCCAGAAAATCACGGTTTGGTTGA 2049 0.4651 MGCVNSKKARAGDPSASPADDGVAYVKSYSRRGRLASGRVGAVVSSSPASRGRSSTSAVVAGEAAEVREGGGDAKRDEAAAAEKLEKKSSKDMVVRENGNGNNGGRGSSRQIGALNARIGLSHRFVEAESIAAGWPPWLTSVAGEAIHGMVPLKSDAFEKLDKIGQGTYSSVFQAREVHSGRMVALKKVRFDNFQPESIRFMAREIIILRALDHPNVMKLEGIITSQLSHSIYLVFEYMEHDLAGLVSSPDIKFSESQIKCYMRQLLSGMEHCHLRGIMHRDIKVSNILVNNDGVLKIGDFGLANTLSPNNKNPLTSRVVTLWYRAPELLMGSTNYGVSVDLWSVGCVFAELFLGKPILKGRNEVEQLHRIFKLCGSPPEEFWRKCKLPLATMFKPQTTYESSLWERCKGFPPTAVSLIETLLSIDPSERGTASSALMSEYFSTKPHACSPSLLPKYPPSKEMDAKYRDDAQRKKVGVAREAATTAKRPKRVQKVLDCPNNNNKTATKEEMQNNAQNGGRDDKVYQTKGRIGLVQQKEMQHKPMFDAKSEAAKTNGSHGYSVYSGPAPASGSTGFTWATKRRKDAASTLSDGSRSKISGLDPNFAKGTYDLARQGIDVSQRNRSYTNFQDETHQESFDGADEYLDYDPTEKADSMISTQGNINEDLHFENGMRRGARKSRFG 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03319 682 MobiDBLite consensus disorder prediction 496 523 - -
Aip04g03319 682 MobiDBLite consensus disorder prediction 68 94 - -
Aip04g03319 682 SUPERFAMILY Protein kinase-like (PK-like) 153 446 IPR011009 -
Aip04g03319 682 MobiDBLite consensus disorder prediction 1 22 - -
Aip04g03319 682 MobiDBLite consensus disorder prediction 95 110 - -
Aip04g03319 682 MobiDBLite consensus disorder prediction 34 110 - -
Aip04g03319 682 MobiDBLite consensus disorder prediction 496 521 - -
Aip04g03319 682 MobiDBLite consensus disorder prediction 43 57 - -
Aip04g03319 682 SMART serkin_6 158 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g03319 682 ProSiteProfiles Protein kinase domain profile. 158 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g03319 682 Gene3D Phosphorylase Kinase; domain 1 148 240 - -
Aip04g03319 682 ProSitePatterns Serine/Threonine protein kinases active-site signature. 278 290 IPR008271 GO:0004672|GO:0006468
Aip04g03319 682 Pfam Protein kinase domain 158 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g03319 682 MobiDBLite consensus disorder prediction 659 682 - -
Aip04g03319 682 ProSitePatterns Protein kinases ATP-binding region signature. 164 187 IPR017441 GO:0005524
Aip04g03319 682 PANTHER CELL DIVISION PROTEIN KINASE 105 617 - -
Aip04g03319 682 Gene3D Transferase(Phosphotransferase) domain 1 241 482 - -
Aip04g03319 682 PANTHER CYCLIN-DEPENDENT KINASE 105 617 - -
Aip04g03319 682 CDD STKc_CDK9_like 158 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03319 Aip-Chr4 127614920 127618186 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03319 156 480 Core Cell Cycle Gene Families AT5G10270 46.921 4.19e-104 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Aip04g03319 Pkinase 7.4e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03319 - - lja:Lj1g3v2982400.1 828.55