Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03316 ATGGACGGAGGTGCAGAAATGTTTGTTGGGAATTATAAGTTAGGAAAAGTGATTGGACATGGATGTTTTGGTAAGGTTAGAATTGCTCAACATTTACCAACCGGTCATAAAGTTGCTATCAAGATCCTTAACCGTGACAAGATCAACCAAATCAAAATGGAAGACAAAGTGAGAAGAGAAATAAAAGTTCTAAGAGTGTTCATGCATCCTCACATCGTGCGGCTTTATGAGGTTGTAGAAACTTTAACTGACATTTATGTTGTTATGGAATATGCCGAATCTGGAGACCTCAATGATTACATAATAATACAAAAGGATAGGTTGCCAGAGGATCAAGCTCGCAAATTTTTTCAGCAGATAATCTGTGGAGTGGAGTACTGTCACAGGAATATGGTGGTACATAGAGACCTGAAGCCAGATAATTTACTTTTAAACTCTAAAGGTAATATCAAAATTGCAGATTTTGGGTTTTGCAACATCATGAGAGATGGTCACCCTCTTACTACAAGTTGTGGAAGCCCCCTCTATGCAGCTCCAGAGGTTGTGTCGGGGAAACAGTATGCAGGACCAGAAGTAGACGTTTGGAGCTGTGGAGTAATTCTATACGCTCTTCTTTGTGCTCACCTTCCTTTTGAAGATGACAATGTTCCAAATCTCTTTAAGAAAATTAAGGGTGGGATATACAGTGTTCCTCGTCATGTATCAGCTGGTGCTAGAGATTTGATAAAAGGGATGCTGGTGGTTGATCCAATGAAAAGGTTGACTATACCTGCCATTCGTCAACACCCATGGTTTACACTTCATCTACCTCCATATTTAGCTTTTCCACCACCACCTCATACCATCCAACAACAAAACAAGATTGTTGATGAGGAAGTCCTTCAACAAGTGGTGAATAAAGGATTCAACAAGAATCAATTGGTTGAATCACTTCAAAACAATATACAAAATGAGGGTACTGTAGCATACTCTTTGTTATTGGACAACAAGCTATGTGATTCCAATGGCTACCTTGGACCAAAGTTTCAAGAATCAATGGATTTGGATTTTAACCACATCCTTTCAAGGGAAGTTGTTTCTTCAGTTGTTGGTCCCTGCTCTTCAAGATCTATGAACAATCCAAGAGTATCATTGAGACCTCAGTTCTCTGTTGAGAGAAAATGGGCCCTTGGGCTTCAGTCTGGTGCCCATCCTCGCGAGATAATAAGCGAGGTCCTTAAAGCTCTACGAGAATTACAAGTTTGTTGGAAGAAAATTGGGCATTACAACATCAAGTGTTTGTGGGTTAATAATCATGACCTTGGAGATTATGGTTCCAACAATGTTGACAATTATATTGCTACTTCCTCTGCTTCAAATGTCATCAAATTTGAAGTGCAGCTTTACAAAGCTGCAGAAGGAAAATATCTGCTTGATCTTCAAAGGGTTCAAGGTCCACAGCTTCTTTTCTTGGATCTTTGTGTTGCCTTCCTTGTCAAGCTTCGTGTCCTCTAA 1494 0.3976 MDGGAEMFVGNYKLGKVIGHGCFGKVRIAQHLPTGHKVAIKILNRDKINQIKMEDKVRREIKVLRVFMHPHIVRLYEVVETLTDIYVVMEYAESGDLNDYIIIQKDRLPEDQARKFFQQIICGVEYCHRNMVVHRDLKPDNLLLNSKGNIKIADFGFCNIMRDGHPLTTSCGSPLYAAPEVVSGKQYAGPEVDVWSCGVILYALLCAHLPFEDDNVPNLFKKIKGGIYSVPRHVSAGARDLIKGMLVVDPMKRLTIPAIRQHPWFTLHLPPYLAFPPPPHTIQQQNKIVDEEVLQQVVNKGFNKNQLVESLQNNIQNEGTVAYSLLLDNKLCDSNGYLGPKFQESMDLDFNHILSREVVSSVVGPCSSRSMNNPRVSLRPQFSVERKWALGLQSGAHPREIISEVLKALRELQVCWKKIGHYNIKCLWVNNHDLGDYGSNNVDNYIATSSASNVIKFEVQLYKAAEGKYLLDLQRVQGPQLLFLDLCVAFLVKLRVL 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03316 497 ProSiteProfiles Protein kinase domain profile. 12 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g03316 497 SUPERFAMILY KA1-like 326 496 IPR028375 -
Aip04g03316 497 SUPERFAMILY Protein kinase-like (PK-like) 8 290 IPR011009 -
Aip04g03316 497 Gene3D Transferase(Phosphotransferase) domain 1 4 344 - -
Aip04g03316 497 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 4 496 - -
Aip04g03316 497 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 448 496 IPR001772 -
Aip04g03316 497 PANTHER SERINE/THREONINE KINASE 4 496 - -
Aip04g03316 497 CDD UBA_SnRK1_plant 289 329 - -
Aip04g03316 497 SMART serkin_6 12 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g03316 497 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 288 328 IPR015940 -
Aip04g03316 497 Pfam Kinase associated domain 1 454 496 IPR001772 -
Aip04g03316 497 Pfam Protein kinase domain 12 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g03316 497 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Aip04g03316 497 Gene3D Kinase associated domain 1, KA1 391 495 - -
Aip04g03316 497 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Aip04g03316 497 CDD STKc_AMPK_alpha 9 265 - -
Aip04g03316 497 CDD AMPKA_C 385 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03316 Aip-Chr4 127569988 127574950 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03316 9 318 CBL-interacting serine-threonine protein kinases AT4G24400 40.785 3.02e-84 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Aip04g03316 Pkinase 9.3e-78 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03316 K07198 - gmx:100796687 691.419