Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03315 ATGGATGGAGGCCGTGGTGCTACCGGTGTGGATATGTTTCTTCCAAATTATAAACTTGGAAAAACACTTGGCATTGGATCCTTTGGCAAGGTGAAAATTGCAGAACATGTATTGACCGGTCATAAAGTTGCCATTAAGATTCTTAACCGTAGGAAGATAAAGAACATGGAAATGGAAGAAAAAGTGAGAAGAGAAATCAAAATTTTAAGACTGTTCATGCATCCTCACATTATTCGGCTTTATGAGGTTGTAGAAACTCCAACTGACATCTACGTTGTGATGGAATATGTGAAATCTGGAGAGCTCTTTGACTACATAGTAGAAAAGGGCAGGTTGCCAGAGGATGAAGCCCGCAATTTTTTTCAGCAGATAATCTCTGGTGTGGAGTACTGTCACAGAAATATGGTGGTTCATAGAGACTTGAAGCCAGAGAATTTACTTTTGGACTCCAGGCGCAATGTCAAGATAGCAGATTTTGGCTTGAGCAACATCATGAGGGATGGTCACTTTCTTAAGACAAGCTGTGGAAGCCCTAACTACGCAGCTCCGGAGGTTATCTCTGGGAAATTGTATGCTGGACCTGAAGTAGATGTTTGGAGCTGTGGTGTAATTCTCTATGCCCTTCTTTGTGGCACCCTTCCTTTTGATGATGAAAACATTCCAAATCTCTTCAAGAAAATAAAGGGCGGGATATACACTCTTCCTAGTCATCTCTCACCTGGTGCTAGAGATTTGATACCAAGGATGCTTGTGGTTGATCCTATGAAGAGGATGACCATACCTGAGATCCGTCAACACCCATGGTTCCAGGCTCGTCTTCCTCGTTATTTAGCTGTGCCACCACCAGATACAATGCAACAAGCAAAAAAGATTGACGAGGAGATCCTTCAGGAAGTAGTGAATATGGGATTTGACAGGAATCAGTTGGTTGAATCACTTCGCAACAGGATGCAAAATGAGGGTACTGTAGCATACTATTTGTTATTAGACAACAGATTCCGTGTTTCCAGTGGCTATCTTGGAGCTGAGTTTCAAGAGTCAATGGATTCTGGTTTTAACCAAATGCATCCCAGTGAAGTTGTTTCTCCAGTTCTTGGGCACCGCATTTCCAGCTATATGGATAACCCAGGTGTAGGATTGAGACCACAGTTGCCAGTTGAGAGAAAATGGGCACTTGGGCTTCAGTCTCGTGCCCACCCTCGTGAAATAATGACCGAGGGATGGTTAACAATCACTACTTTGGAGATGATTCCAGCATTATTGAGAATGATGCTGTTTCTAATACTAATGTGGTCAAGTTTGAAGTGCAGCTTTACAAAACTCGGGAAGAAAAGTATCTGCTTGATCTTCAAAGGCTCCAAGCCTAGTGTTGTAAATTGCTATTTGGACGTGGAAGCAGAAGGGTGTGCCCCTTTAGTCTCTAGGGTGGGTCTAAATGGAACTTGCCTATCTAGCCTCTTGTTTTTACTTTGCATGTAA 1479 0.4273 MDGGRGATGVDMFLPNYKLGKTLGIGSFGKVKIAEHVLTGHKVAIKILNRRKIKNMEMEEKVRREIKILRLFMHPHIIRLYEVVETPTDIYVVMEYVKSGELFDYIVEKGRLPEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSRRNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLVVDPMKRMTIPEIRQHPWFQARLPRYLAVPPPDTMQQAKKIDEEILQEVVNMGFDRNQLVESLRNRMQNEGTVAYYLLLDNRFRVSSGYLGAEFQESMDSGFNQMHPSEVVSPVLGHRISSYMDNPGVGLRPQLPVERKWALGLQSRAHPREIMTEGWLTITTLEMIPALLRMMLFLILMWSSLKCSFTKLGKKSICLIFKGSKPSVVNCYLDVEAEGCAPLVSRVGLNGTCLSSLLFLLCM 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03315 492 SMART serkin_6 17 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g03315 492 SUPERFAMILY KA1-like 326 414 IPR028375 -
Aip04g03315 492 SUPERFAMILY Protein kinase-like (PK-like) 14 270 IPR011009 -
Aip04g03315 492 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 7 411 - -
Aip04g03315 492 CDD STKc_AMPK_alpha 14 269 - -
Aip04g03315 492 CDD UBA_SnRK1_plant 291 331 - -
Aip04g03315 492 Gene3D Transferase(Phosphotransferase) domain 1 8 347 - -
Aip04g03315 492 ProSiteProfiles Protein kinase domain profile. 17 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g03315 492 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Aip04g03315 492 PANTHER SERINE/THREONINE KINASE 7 411 - -
Aip04g03315 492 SMART uba_6 292 329 IPR015940 -
Aip04g03315 492 ProSitePatterns Protein kinases ATP-binding region signature. 23 46 IPR017441 GO:0005524
Aip04g03315 492 Pfam UBA/TS-N domain 291 327 IPR015940 -
Aip04g03315 492 SUPERFAMILY UBA-like 279 328 IPR009060 GO:0005515
Aip04g03315 492 Gene3D Kinase associated domain 1, KA1 382 418 - -
Aip04g03315 492 Pfam Protein kinase domain 17 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g03315 492 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 290 330 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03315 Aip-Chr4 127560287 127565494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03315 17 269 CBL-interacting serine-threonine protein kinases AT4G24400 52.756 1.45e-93 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Aip04g03315 Pkinase 5.5e-81 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03315 K07198 - gmx:100796687 766.533