Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03314 ATGGCAAGGAAGAGAAAGGTTGCTGAAGCAATTGAAGAAGAAAACATGGAATCATGGCATGAAATGATCAAAGAAGGTGCAGCATTAGGAGAATCTACAAGAAGATCAAGAAAGAGGTTTGTTGGTGTGAGACAAAGGCCATCAGGAAGATGGGTGGCTGAGATCAAAGATACCATTCAGAAGATCAGAGTTTGGTTAGGAACTTTTGATACTGCTGAAGAAGCTGCAAGAGCCTATGATGAAGCAGCTTGGATCCTCCGCGGATCCAATACTCGAACCAACTTTGATCCTTGTTATCCTCATTCTTCCTCAAATCCTGCTCTTTCCTCAAAGATTGCAAATCTCCTCCTTCAAAGGCTTAAAGCAAAGAATAATATCATCTCTTGTTCTAATCTTAGTACTACTCACCAACAAGATCATCAAGCTGATGTGTATGGAGCAGAGTCGAAAGCTTTCTCGATTGATCAATTCGCAGATTTCCTTTATGATCCTGAAGCTTGTAGCGCAAGCAACAACGAATTTAGTGATAATATTGAACAAATTGATTGCATCACTAGTAGTTTTGAATCGTGTTTAACAGAGAAAGATGCCAAAAGGGAGAAAGAAATGGATGCAACACAGACATCAAGCATTGACTCGAATTCAAGAGTGAAAAATGAGGAAGAAATCGAAGAAGAAGAAGGTATGATTGTTGAGGATTTCAGGTTCCTGGATGAGAATGCTATTGTTTCATCAAGTTACTGTTATTCTCCTTTTGAGATTGTTGAAGAGATGGAGGAGCCTGTGGAGGCAGAGAACTATGATGGTGATGATGAGCCTTCAATGATGAAAGCTATAATGAACAGAATGAAGTATGAGAGAAAGTTCTCAGCTTCTCTCTATGCCTTCAATGGGATACATGATTATGAGTGCTTGAAGTTGAAGCTTCAGTCAGGGAACATAAAGAGTAGAACAGGAATTTCAGATCAAATTAGCAAACTTAACAAGGCTTGCAGCAAGAACAAAAATGAGGTTAATAAGGAGGAAGATGAAAAGGAAAAGGAGAAGGAATCTATTGATGGAGATTTGTTGTTTTGGAACTCCCTTGATCTCCCTAATATTTTCTAA 1107 0.3884 MARKRKVAEAIEEENMESWHEMIKEGAALGESTRRSRKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAAWILRGSNTRTNFDPCYPHSSSNPALSSKIANLLLQRLKAKNNIISCSNLSTTHQQDHQADVYGAESKAFSIDQFADFLYDPEACSASNNEFSDNIEQIDCITSSFESCLTEKDAKREKEMDATQTSSIDSNSRVKNEEEIEEEEGMIVEDFRFLDENAIVSSSYCYSPFEIVEEMEEPVEAENYDGDDEPSMMKAIMNRMKYERKFSASLYAFNGIHDYECLKLKLQSGNIKSRTGISDQISKLNKACSKNKNEVNKEEDEKEKEKESIDGDLLFWNSLDLPNIF 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03314 368 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 11 325 - -
Aip04g03314 368 Coils Coil 324 351 - -
Aip04g03314 368 Pfam AP2 domain 39 83 IPR001471 GO:0003700|GO:0006355
Aip04g03314 368 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Aip04g03314 368 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Aip04g03314 368 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Aip04g03314 368 CDD AP2 38 96 IPR001471 GO:0003700|GO:0006355
Aip04g03314 368 SUPERFAMILY DNA-binding domain 39 96 IPR016177 GO:0003677
Aip04g03314 368 Gene3D AP2/ERF domain 38 97 IPR036955 GO:0003700|GO:0006355
Aip04g03314 368 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Aip04g03314 368 PANTHER AP2/ERF DOMAIN TRANSCRIPTION FACTOR 11 325 - -
Aip04g03314 368 MobiDBLite consensus disorder prediction 199 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03314 Aip-Chr4 127558191 127559350 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03314 31 116 AP2-EREBP Transcription Factor Family AT5G19790 69.767 1.92e-33 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Aip04g03314 AP2 5.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03314 K09286 - gmx:100786711 380.178