Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03305 ATGGGAAGATCACCATGTTGTGACAAAGTGGGTTTGAAGAAAGGACCATGGACACCAGAGGAAGATCAGAAGCTCTTAGCCTATATTGAAGAACATGGTCATGGAAGCTGGCGCGCTTTGCCAGCAAAAGCAGGGCTTGAAAGGTGTGGGAAGAGCTGCAGATTGAGATGGACAAATTATCTAAGGCCTGATATTAAGAGGGGAAAGTTCAGTTTGCAAGAAGAACAAGCTATCATTCAGCTTCATGCACTCTTAGGAAACAGGTGGTCAGCTATAGCCACACATTTGCCAAAAAGGACAGATAATGAGATAAAAAATTATTGGAACACGCATCTCAAAAAAAGATTAACAAAAATGGGCATCGATCCTGTGACTCATAAGCCCAGAAACGATGCCCTAGTCTCTGGTGACGGCGGCCATTCAAAGAAGGTCGCCGCCAACCTCAGCCACATGGCTCAGTGGGAGAGTGCTAGGCTTGAAGCTGAAGCAAGATTGGTTAGGGAATCAAAATTACGTTCATCACAACAACACTCATTACAAATTCCAAGTTCTACTACCACTTTTCCATCTTCGTCCTCGTCTTCGTCTTCAGCTCAAGTTATGATCAAATTAGCCGACGAATCTCCAATAACAACAACCAAGGATTGGACTAATAATGAAGATTGGTTATTGAGATCTAATCATGAAAGTAATGGTGGTGGTGGAATGGGAAATGCTGAACTTGAGTCACCAACATCTACATTATCATTCTCGGAGAACAATGCATCACCAGCAATAATTGGAGAAAATAGCAACAATAATGTTAATGTAGTGGTGCCTATGATTGAGTTTGTTGGAGCTACTTCAGGTTCATATTCTGAGAATGATGGAATTATTAGGAGTATTAACGTGAAGGAAGAAGGTAGTGAAGATCATCATGATCATCATCAACATGAGTGGAAAGACTATGATAATAATTCTTCAATGGGTACTACTTTCAACCCTAGCTTGCATGAATTGACAATGATGACCATGGAATCCACGTGGGGAAGTTCTTCTCATCATCATCAAAATCATGATCATGATGATGAGTCTCTTAGGACAAGTGGTAGTAATGGTGCACATGTTAATGTTGGTGATGATGATGATGATGATGCTGAAGAAGAAGATGAAGAGTTAGGGTTCACAAATCTTCTGCTGAATACTAATAATAATAACAACCCTAATAATGATAATAATGAATTGAGTTTGTCATCTGAAGGTGGTGGTGGTGGTGGCGGCGGCGGCGGCGGCGGAGAGTCTCATAACAATGACAATGGTGATTCCTATGAAGATAAGAACTATTGGAACAGCATTCTCCATTTGGTGGATTCTTCACCTTCTGATTCACCAATCTTTTGA 1380 0.4101 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLERCGKSCRLRWTNYLRPDIKRGKFSLQEEQAIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLTKMGIDPVTHKPRNDALVSGDGGHSKKVAANLSHMAQWESARLEAEARLVRESKLRSSQQHSLQIPSSTTTFPSSSSSSSSAQVMIKLADESPITTTKDWTNNEDWLLRSNHESNGGGGMGNAELESPTSTLSFSENNASPAIIGENSNNNVNVVVPMIEFVGATSGSYSENDGIIRSINVKEEGSEDHHDHHQHEWKDYDNNSSMGTTFNPSLHELTMMTMESTWGSSSHHHQNHDHDDESLRTSGSNGAHVNVGDDDDDDAEEEDEELGFTNLLLNTNNNNNPNNDNNELSLSSEGGGGGGGGGGGGESHNNDNGDSYEDKNYWNSILHLVDSSPSDSPIF 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03305 459 MobiDBLite consensus disorder prediction 389 412 - -
Aip04g03305 459 CDD SANT 69 112 IPR001005 -
Aip04g03305 459 Gene3D - 69 116 - -
Aip04g03305 459 CDD SANT 16 61 IPR001005 -
Aip04g03305 459 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Aip04g03305 459 PANTHER TRANSCRIPTION FACTOR MYB106 1 452 - -
Aip04g03305 459 Gene3D - 13 66 - -
Aip04g03305 459 MobiDBLite consensus disorder prediction 300 327 - -
Aip04g03305 459 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 452 - -
Aip04g03305 459 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Aip04g03305 459 MobiDBLite consensus disorder prediction 171 195 - -
Aip04g03305 459 MobiDBLite consensus disorder prediction 373 387 - -
Aip04g03305 459 MobiDBLite consensus disorder prediction 340 438 - -
Aip04g03305 459 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Aip04g03305 459 MobiDBLite consensus disorder prediction 224 250 - -
Aip04g03305 459 MobiDBLite consensus disorder prediction 122 141 - -
Aip04g03305 459 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Aip04g03305 459 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Aip04g03305 459 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Aip04g03305 459 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Aip04g03305 459 MobiDBLite consensus disorder prediction 300 316 - -
Aip04g03305 459 SMART sant 13 63 IPR001005 -
Aip04g03305 459 SMART sant 66 114 IPR001005 -
Aip04g03305 459 MobiDBLite consensus disorder prediction 346 361 - -
Aip04g03305 459 MobiDBLite consensus disorder prediction 172 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03305 Aip-Chr4 127464899 127467878 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03305 1 260 MYB Transcription Factor Family AT3G01140 65.000 2.85e-110 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip04g03305 Myb_DNA-binding 2.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03305 K09422 - gmx:100101835 438.728