Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03304 ATGGAATCAATGGAGAATGTTAGAATGCAAAGAGAGAAAGATCAGAAGTTCGAATTGCCGTCCGGCTTTCGATTTCATCCCACCGATGTAGAGCTCATAAATTACTACCTTGTTAAGAAGGTTCTTGATGATAAGCACTTCTGTTCTATAGCAATTGCTGATGCTGATATGAACAAGTCTGAGCCATGGGATTTACCCGGTTTAGCGAAAATGGGCGAAACGGAATGGTATTTTTTCTCTATGAAGGATAGAAAATACCCAACTGGCCAAAGGACTAATAGGGCGACGGAGGCCGGTTATTGGAAGGCCACAGGCAAAGACAAGGAGATATCAAAGGAGAATTCAAAGATTGGGATGAAGAAGACCCTTGTTTTCTACAAAGGAAGAGCTCCAAGAGGTGAAAAGACTAATTGGGTCATGCATGAATATAGATTGGAAGGGAACAAATCTGTTTATAATCTGTCACAACCTGAAAGAGGTGAATGGGTTATATGCAGAGTATTTGAGAAGGGCAATCATGGAAAAAGACTGAATATTGCAAAGTTGGAGAGGCTCAACTCTTTGGGAGAGGAACCATTACCATTGCCAAAACCTACTCCTTTGATGCCTCCATTGATGGATTCTTCATCATCGAGAACCACCCCCGGCGAGTTATCTCAGGCGACGTGCTACTCCTCTGATCCGAATCAAGCCGAAGTCCGGAACAATTTGCATGATGACATAGTTGAAAGCAGGGAAACTCCTATCTTGAACTTTTCCCCTGCTTCCATCAATGAAGAATTTTTTCAGATTCCCAACCAAATTGAGAAACCGGATTGTTATACTCCGCCTCAAGAAAACAACGGATCAATTGCAAGGCAGAATCAGAAATCAGAGTTTGATGCTGATATATCATCTTTGATTTACAACAATGACATGTTTTACAGGTTCTTTGGGAACCAAGAACATTCATCTTCAGCTTCTGCAGACATTTGCAACCTATGGAATTACTAG 993 0.4149 MESMENVRMQREKDQKFELPSGFRFHPTDVELINYYLVKKVLDDKHFCSIAIADADMNKSEPWDLPGLAKMGETEWYFFSMKDRKYPTGQRTNRATEAGYWKATGKDKEISKENSKIGMKKTLVFYKGRAPRGEKTNWVMHEYRLEGNKSVYNLSQPERGEWVICRVFEKGNHGKRLNIAKLERLNSLGEEPLPLPKPTPLMPPLMDSSSSRTTPGELSQATCYSSDPNQAEVRNNLHDDIVESRETPILNFSPASINEEFFQIPNQIEKPDCYTPPQENNGSIARQNQKSEFDADISSLIYNNDMFYRFFGNQEHSSSASADICNLWNY 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03304 330 Gene3D NAC domain 28 175 IPR036093 GO:0003677|GO:0006355
Aip04g03304 330 SUPERFAMILY NAC domain 15 170 IPR036093 GO:0003677|GO:0006355
Aip04g03304 330 MobiDBLite consensus disorder prediction 204 230 - -
Aip04g03304 330 PANTHER ANAC079/ANAC080/ATNAC4 PROTEIN 3 322 - -
Aip04g03304 330 ProSiteProfiles NAC domain profile. 19 170 IPR003441 GO:0003677|GO:0006355
Aip04g03304 330 Pfam No apical meristem (NAM) protein 20 145 IPR003441 GO:0003677|GO:0006355
Aip04g03304 330 MobiDBLite consensus disorder prediction 189 230 - -
Aip04g03304 330 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03304 Aip-Chr4 127440337 127442035 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03304 17 330 NAC Transcription Factor Family AT5G07680 46.061 3.53e-82 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aip04g03304 NAM 7.3e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03304 - - gmx:100782172 394.43