Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03299 ATGCAGGAGGAAAATAAAGTAACAACAAACATGGCTCTTCTTGGAATCTTTCTTGTGGTGGCATATTTTTCTGTGGTCTCACAACATGTCATTGGATATGGAAATTGGATCAATGCTCATGCCACTTTCTATGGTGGAAGTGATGCTTCTGGAACAATGGGGGGTGCTTGTGGATATGGAAACCTGTATAGCAGTGGATATGGGACAAACACAGCAGCACTAAGCACAGCACTATTCAACAATGGATTAACATGTGGAGCATGCTATGAAATAAAGTGTGCGAATGACCCACAATGGTGTCTTCCAGGCTCCATTGTAGTAACTGCCACTAATTTCTGTCCTCCTGGTGGATGGTGTGACCCTCCAAATCACCATTTTGATCTCTCTCAACCTATTTTCCAGCACATTGCACAATATAAAGCTGGAATTGTGCCTGTAGTTTATAGAAGGGTAAGGTGCAGGAGAAGGGGTGGAATAAGGTTCACCATCAATGGACACTCATACTTCAATTTGGTGCTAGTGACAAATGTTGGAGGTGCAGGTGATGTGCATGGTGTGGCCATTAAAGGCTCAAGAACAAGATGGCAATCCATGTCAAGGAACTGGGGGCAAAATTGGCAAAGCAACTCATACCTCAATGGCCAAAGTCTTTCTTTTATAGTCACCACAAGTAATGGACACAAGGTCTTGTCTTATAATGTTGCCCCACCTAATTGGTCCTTTGGACAGACCTACACTGGAAGGCAATTCAACTACTAA 759 0.4321 MQEENKVTTNMALLGIFLVVAYFSVVSQHVIGYGNWINAHATFYGGSDASGTMGGACGYGNLYSSGYGTNTAALSTALFNNGLTCGACYEIKCANDPQWCLPGSIVVTATNFCPPGGWCDPPNHHFDLSQPIFQHIAQYKAGIVPVVYRRVRCRRRGGIRFTINGHSYFNLVLVTNVGGAGDVHGVAIKGSRTRWQSMSRNWGQNWQSNSYLNGQSLSFIVTTSNGHKVLSYNVAPPNWSFGQTYTGRQFNY 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03299 252 PRINTS Expansin signature 157 169 IPR002963 GO:0009664
Aip04g03299 252 PRINTS Expansin signature 105 115 IPR002963 GO:0009664
Aip04g03299 252 PRINTS Expansin signature 233 249 IPR002963 GO:0009664
Aip04g03299 252 PRINTS Expansin signature 169 190 IPR002963 GO:0009664
Aip04g03299 252 PRINTS Expansin signature 93 104 IPR002963 GO:0009664
Aip04g03299 252 PRINTS Expansin signature 66 80 IPR002963 GO:0009664
Aip04g03299 252 PRINTS Expansin signature 204 225 IPR002963 GO:0009664
Aip04g03299 252 PRINTS Expansin signature 116 133 IPR002963 GO:0009664
Aip04g03299 252 PRINTS Expansin signature 133 146 IPR002963 GO:0009664
Aip04g03299 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 168 247 IPR007117 -
Aip04g03299 252 SUPERFAMILY Barwin-like endoglucanases 35 176 IPR036908 -
Aip04g03299 252 PRINTS Expansin/Lol pI family signature 195 209 IPR007118 GO:0005576
Aip04g03299 252 PRINTS Expansin/Lol pI family signature 53 71 IPR007118 GO:0005576
Aip04g03299 252 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576
Aip04g03299 252 PRINTS Expansin/Lol pI family signature 75 93 IPR007118 GO:0005576
Aip04g03299 252 PRINTS Expansin/Lol pI family signature 141 157 IPR007118 GO:0005576
Aip04g03299 252 PRINTS Expansin/Lol pI family signature 35 50 IPR007118 GO:0005576
Aip04g03299 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 54 158 IPR007112 -
Aip04g03299 252 SUPERFAMILY PHL pollen allergen 155 247 IPR036749 -
Aip04g03299 252 PANTHER EXPANSIN 15 251 - -
Aip04g03299 252 Gene3D - 22 154 IPR036908 -
Aip04g03299 252 Pfam Lytic transglycolase 71 148 IPR009009 -
Aip04g03299 252 PANTHER EXPANSIN-A15 15 251 IPR002963 GO:0009664
Aip04g03299 252 Gene3D - 158 250 IPR036749 -
Aip04g03299 252 Pfam Expansin C-terminal domain 159 236 IPR007117 -
Aip04g03299 252 SMART dpbb_1 71 148 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03299 Aip-Chr4 127389791 127392070 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03299 11 250 Expansin Gene Family AT2G03090 76.613 2.03e-137 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03299 K20628 - gmx:100791784 435.647