Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03278 ATGAGGAGGTACAATCTGAGGAGCAGTGATTCATCAAGGAACGAAGAAAGCAATGATTATTCAAGAGACGTAAGAACGTATGTGAGATACGGAGAGTGTGAGAAGAACCAAGCAGAGCGCATCGGAGGCCACGCCGTCGACGGTTGCAGAGAGTTCATGGCTAGCGGAGCTGAAGGAACACCTCAAGCTCTCACTTGTGCCGCTTGTGGCTGCAACAGAAGCTTCCATAAGCTTGAACTTCGAACCGAGCTTGTT 255 0.498 MRRYNLRSSDSSRNEESNDYSRDVRTYVRYGECEKNQAERIGGHAVDGCREFMASGAEGTPQALTCAACGCNRSFHKLELRTELV 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03278 85 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 29 79 IPR006456 -
Aip04g03278 85 Pfam ZF-HD protein dimerisation region 28 79 IPR006456 -
Aip04g03278 85 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 21 79 - -
Aip04g03278 85 MobiDBLite consensus disorder prediction 1 21 - -
Aip04g03278 85 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 30 79 IPR006456 -
Aip04g03278 85 PANTHER MINI ZINC FINGER PROTEIN 2 21 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03278 Aip-Chr4 127046566 127046820 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03278 24 85 Zinc finger-homeobox gene family AT3G28917 73.016 7.60e-26 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Aip04g03278 ZF-HD_dimer 9.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03278 - - ahf:112740680 172.17