Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03277 ATGAAAAAGTATTACATAAAGAATAACGACCAACCTGATTCTTCCTCCTCCTCCACCTCCTCCTCGGCCATCAGGATTTATGTGACATACGGCGAGTGCCAAAGGAACCAAGCCGAGTGGCTCGGAGGACACGCGGTTTTGATTTTGAACATCATGAAAAAGTATTACATAAAGAATAACGACCAACCTGATTCTTCCTCCTCCTCCACCTCCTCCTCGGCCATCAGGATTTATGTGACATACGGCGAGTGCCAAAGGAACCAAGCCGAGTGGCTCGGAGGACACGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCGGTTGACGGTTGTCAAGCTTTCATGCCGAGCGGAGAAGAAGGAACACCAGAAGCTCTCTCATGTGCCGCTTGTAACTGCCATAGGAGCTTCCACAAGCTTGAAGTGCATGCTGAAGGCGAAGACAGTAATGATTACCTTCCTCCACCACAAAGGAGCTAG 480 0.4688 MKKYYIKNNDQPDSSSSSTSSSAIRIYVTYGECQRNQAEWLGGHAVLILNIMKKYYIKNNDQPDSSSSSTSSSAIRIYVTYGECQRNQAEWLGGHAXXXXXXXXXXAVDGCQAFMPSGEEGTPEALSCAACNCHRSFHKLEVHAEGEDSNDYLPPPQRS 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03277 159 PANTHER ZF-HD HOMEOBOX PROTEIN, CYS/HIS-RICH DIMERIZATION DOMAIN-CONTAINING PROTEIN-RELATED 14 46 - -
Aip04g03277 159 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 81 141 IPR006456 -
Aip04g03277 159 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 106 141 IPR006456 -
Aip04g03277 159 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 14 46 - -
Aip04g03277 159 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 64 145 - -
Aip04g03277 159 PANTHER ZF-HD HOMEOBOX PROTEIN, CYS/HIS-RICH DIMERIZATION DOMAIN-CONTAINING PROTEIN-RELATED 64 145 - -
Aip04g03277 159 Pfam ZF-HD protein dimerisation region 79 141 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03277 Aip-Chr4 127033000 127034719 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03277 77 158 ZF-HD Transcription Factor Family AT2G02540 43.820 3.65e-19 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Aip04g03277 ZF-HD_dimer 1.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03277 - - ahf:112740679 202.986