Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03276 ATGGCTGAATCGTTTGATATGTTGATGGACATCAGTCCGAAAAAACTTGCATGGAACTTCTTGGTCTATGTTGTTCGTTTGTGGGAAGCTCCTAGCCGGTACAATCTTAAAGAGATCAATAGCATTGAAATGGTTCTTCAAGATAGTCAGGCAAGGAGGATCCAAGCTTCGGTCCCTAAGGCGTTGGTACGTAGATGGAATGATAACCTTGCTGAGTTCAAGATGTATAAAATGTCAAATTTCATTGTTGTAGACAAGAGGGAGAAAACCAAGACAACTATGAATCGGTGGACCTTAAACTTCTCTCACCGAACTGTGGTGCTCTTGGTGGAGAATCCAACTTTCCCACTTCAAGCGTTTCGATTAACGCAAATTCCAGAGTTGTTAAATGCTGACAGGATCGATGACTCTCAATTAGTAGATATTATGGGTGAAGTGGTTGGAAAGGAAGATCCCAGGGAACTCATCACAAGCAAAGGGAAGGAAACGAAGCGTCTAGCTATTTTGGTTGAAGATCTTGATAATTATCGTATTGGGTGTGTGTTGTTTGGGGACATGGTTGATCAAATACTACCATACCTAGATGATGGAAGAGTTGAGCCATTGATAGTGGTCCTGCAGTTCTTCCGACCGAGTAGATGGAATGAGAAAACCTCAGTACAGAGTCATTTCGACATTTCTAAGCTACGCATCAATCCCGATCTCGATGAGGTTCGCGACTTCCGTGACAGGAGGCTTGCCGCTACACCCTCAAATTTGGTCAGAATTAGTCAAGTCAACACAAACAACTCACATTCTGGGGCAGATGAACTTAAGCGGGGAGATGTGACGGTGAACACAATAGAGGAAGCACTAAACTCTACACAGGAAGGCCCTTTGTGGATTGCTGGAACAGTTGTGGCAATCAATTCTGGCAAGGATGATTGGTTTTACAAATCATGTAGGAAGTGTCCGAAGAAGGTTGAAACACCAATTGGAAATAGATACGAGTGTGGAAAGTGTGGCCACACTCACGGAAGTGCATCACTAAGGTTTAAGGTTGAGGTGATGGCCTATGATGGCACTGGTAGCATAACACTGCTTCTATGGGATCGAGAAACAGTTCAACTATGTGGTAGACAAGCAGAACAGATCAAGGATGAGGAGGAACTTTATGCTGAAGGATACCCTGCAGCTCTTGAGAGCCTTTTAGAAAGAAAACTGCTTTTTAAGGTGAATGTCAAATCCTCCAACATCAAGCTATATGACCAGGTGTATACAGTGATGAAGGTCTGCGAGGATGATACAATTTTTGAAATGCATCTGCCAAATAAAACGTTCTCTACTGTAACTGATACTGGGTGCAGTAACTCGGTGGATTTGTCAGCAACTATGGTTAATATCAACAATCTTAGTGATTCTCAATATTCTGTGGATGTTGTGGAGGATAGTGTTACAAGCCTCAAGTGCAAAACCCCAGCAAAAACAGCTACCATGGTTTTAAACCAACAAATTCCCATCAACATTGAGAATGAAGAAGAACTGGGGTTTTCAACCAACAAACTTACCCGCAATCGTGGAAAGAGACAGAAGATGCAAGTTCATGATAATAATGAATGA 1599 0.424 MAESFDMLMDISPKKLAWNFLVYVVRLWEAPSRYNLKEINSIEMVLQDSQARRIQASVPKALVRRWNDNLAEFKMYKMSNFIVVDKREKTKTTMNRWTLNFSHRTVVLLVENPTFPLQAFRLTQIPELLNADRIDDSQLVDIMGEVVGKEDPRELITSKGKETKRLAILVEDLDNYRIGCVLFGDMVDQILPYLDDGRVEPLIVVLQFFRPSRWNEKTSVQSHFDISKLRINPDLDEVRDFRDRRLAATPSNLVRISQVNTNNSHSGADELKRGDVTVNTIEEALNSTQEGPLWIAGTVVAINSGKDDWFYKSCRKCPKKVETPIGNRYECGKCGHTHGSASLRFKVEVMAYDGTGSITLLLWDRETVQLCGRQAEQIKDEEELYAEGYPAALESLLERKLLFKVNVKSSNIKLYDQVYTVMKVCEDDTIFEMHLPNKTFSTVTDTGCSNSVDLSATMVNINNLSDSQYSVDVVEDSVTSLKCKTPAKTATMVLNQQIPINIENEEELGFSTNKLTRNRGKRQKMQVHDNNE 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03276 532 Pfam Replication factor-A C terminal domain 297 426 IPR013955 -
Aip04g03276 532 SUPERFAMILY Nucleic acid-binding proteins 280 434 IPR012340 -
Aip04g03276 532 Gene3D - 5 108 IPR012340 -
Aip04g03276 532 CDD RPA1_DBD_A_like 22 107 - -
Aip04g03276 532 Pfam Domain of unknown function DUF223 43 123 IPR003871 -
Aip04g03276 532 Gene3D - 256 433 IPR012340 -
Aip04g03276 532 SUPERFAMILY Nucleic acid-binding proteins 123 244 IPR012340 -
Aip04g03276 532 CDD RPA1_DBD_B_like 141 245 - -
Aip04g03276 532 CDD RPA1_DBD_C 278 436 IPR013955 -
Aip04g03276 532 SUPERFAMILY Nucleic acid-binding proteins 7 113 IPR012340 -
Aip04g03276 532 Gene3D - 114 249 IPR012340 -
Aip04g03276 532 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 367 - -
Aip04g03276 532 MobiDBLite consensus disorder prediction 511 532 - -
Aip04g03276 532 PANTHER REPLICATION FACTOR A 1, RFA1 22 367 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03276 Aip-Chr4 127021177 127023645 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03276 8 407 Core DNA Replication Machinery Family AT5G08020 21.898 1.98e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03276 - - aip:107630584 1035.79