Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03268 ATGTCTAGCGGAAGCAGATCATCAAGGCAGCGATCTCACTCTACAAGGATCTCCGACGATCAAATCATCCAGCTTGTTTCCAAGTTGCGCCAACTTGTTCCAGAGATTCGCAATAGGCGCTCCGACAAGGTATCGGCTTCTAAGGTGCTGCAAGAGACTTGCAATTACATAAAAAACTTACACAGAGAGGTTGATGATTTAAGCGAGCGTTTGGGTCAGTTGTTATCCACAATTGATGCTGATAGTGCTGAAGCTGCCATCATTAGGAGCCTACTTAGCAACTAA 285 0.4526 MSSGSRSSRQRSHSTRISDDQIIQLVSKLRQLVPEIRNRRSDKVSASKVLQETCNYIKNLHREVDDLSERLGQLLSTIDADSAEAAIIRSLLSN 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03268 94 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 60 IPR011598 GO:0046983
Aip04g03268 94 Coils Coil 50 77 - -
Aip04g03268 94 Pfam Helix-loop-helix DNA-binding domain 22 60 IPR011598 GO:0046983
Aip04g03268 94 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 24 79 IPR036638 GO:0046983
Aip04g03268 94 Gene3D - 5 89 IPR036638 GO:0046983
Aip04g03268 94 PANTHER TRANSCRIPTION REGULATOR 5 92 - -
Aip04g03268 94 PANTHER TRANSCRIPTION FACTOR PRE 5 92 IPR044293 GO:0006355|GO:0040008|GO:0046983
Aip04g03268 94 CDD bHLH_AtPRE_like 17 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03268 Aip-Chr4 126883715 126884399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03268 14 92 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 73.750 2.81e-36 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip04g03268 HLH 4.5e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03268 - - gmx:100796852 145.206