Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03261 ATGGCAGCTAGGTATGATCTCATCAAGTTTATCAATGCTGGTCCAGAGCATAAGGCACCTATTGAGATGGTTGTCCTTGATGAAGAGGGGGATACAATTCAATGCTCTATTAAAGGCATATTTGTTCCTATCTTCGAGGGCCTACTACTCGCTGAGGGCAACGTGTACGTGGTCACTAATTTCACAATTTCTTTGAATACCATCAAGTTCAAGCCTACTAGACACGAATTTAGAATAAACTTCAACAGGGACACGAATGTGCGTCCGGTACAAGACTCTTCAGTTTCATTGAACAGATTCAATTTTGTTCCGTTCAAAAAAATTCATGCAGAGTCTAAAGAAAATGGTTATTTAGTTGATGTGATAGGTCAACTTGCCTCTAAGGGTAACTTGGTCGAGTTCACATGGGACGGGAAGCCGTCAAGTTATATCATGATAGAACTTGATGATCTTGAGGGTGGACAGAAATTAAGGGTAACGTTGTGGCAGACTTTGGCTTTTAACTTGATCAAATATTTGGAGGAACACCCATGTCTTACCTATGTGGTTATTCTCCAAATGGGCAAGATGAAATTTTATAGTGGGGTCATGGGTGTTTCCAACATAATCTACAATTCGAAACTATTTATCAATGTTGAGTTTCCAGCTGCCAGGAATTTCTTTACAAGGGTGAACAAATTGGATCCTGTTGACGGACAAAGCATAATGCTACTGGTCTGTGATCAACCTGTTTCAATTGAGGAAGATTTTTTGCGTATGTCAATCTACAAAACAATTGTCGAGATAAAGGAGCATAATCAGGATGCTGTATTTGTTACTGCTGGGACAATTAAGGAAGTTGAGACCGAGTTTGGTTGGTGGTACAAAGGATGTAAGAAGTGTCGTCGTGGCTTAAGAGAACTTGAGAAAAGATATTTCTGTCCCAATTGCGTTGAAGACTACGGGTTCTATGTACCAAGAAAAATTGACCGAGGGGTGAACAATGGGACTGCTCCTCCAATTTTTAAGCTTGGGGTCAAAACTACCATAGCATTGGTAGCTTACTTCCTCCTGATAGTTTGCGACCAACATTTGCCCAGCTATATATCTATAACACAGAAAATGAGATTGATAATCGAATAG 1122 0.4002 MAARYDLIKFINAGPEHKAPIEMVVLDEEGDTIQCSIKGIFVPIFEGLLLAEGNVYVVTNFTISLNTIKFKPTRHEFRINFNRDTNVRPVQDSSVSLNRFNFVPFKKIHAESKENGYLVDVIGQLASKGNLVEFTWDGKPSSYIMIELDDLEGGQKLRVTLWQTLAFNLIKYLEEHPCLTYVVILQMGKMKFYSGVMGVSNIIYNSKLFINVEFPAARNFFTRVNKLDPVDGQSIMLLVCDQPVSIEEDFLRMSIYKTIVEIKEHNQDAVFVTAGTIKEVETEFGWWYKGCKKCRRGLRELEKRYFCPNCVEDYGFYVPRKIDRGVNNGTAPPIFKLGVKTTIALVAYFLLIVCDQHLPSYISITQKMRLIIE 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03261 373 SUPERFAMILY Nucleic acid-binding proteins 17 93 IPR012340 -
Aip04g03261 373 Gene3D - 250 339 IPR012340 -
Aip04g03261 373 CDD RPA1_DBD_A_like 21 87 - -
Aip04g03261 373 Gene3D - 3 93 IPR012340 -
Aip04g03261 373 PANTHER REPLICATION FACTOR A 1, RFA1 21 302 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip04g03261 373 SUPERFAMILY Nucleic acid-binding proteins 100 224 IPR012340 -
Aip04g03261 373 Gene3D - 95 228 IPR012340 -
Aip04g03261 373 CDD RPA1_DBD_B_like 120 215 - -
Aip04g03261 373 Pfam Domain of unknown function DUF223 22 116 IPR003871 -
Aip04g03261 373 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 21 302 - -
Aip04g03261 373 SUPERFAMILY Nucleic acid-binding proteins 256 313 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03261 Aip-Chr4 126757788 126760928 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03261 1 313 Core DNA Replication Machinery Family AT2G06510 25.740 4.99e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03261 - - adu:107477146 554.673