Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03247 ATGGGTTACCTGAGCAAAACTTCAAGGACTCTAAGGCAATCAAATTACCTCTCTCTATTACGAAATTCAACCTTTTTCCCATTCAACCCATTAAGCAGCACCACCTTTCATCACCAACAGCGTGCACTCTTGTGTTCTCAGTCGCGGCAACAAAACATTAAGGATAAGAGCGCCATAGATTTGAGCCAGTACCCTCCTGAACTCATTCGAAATTTTTCAATCATTGCGCATGTTGATCATGGCAAGTCTACCCTCGCTGATCGACTCCTTGAACTCACTGCTACCATTAAAAAGGGTCATGGCCAGCCCCAATATCTTGATAAGTTGCAGGTGGAGAGAGAAAGGGGAATCACAGTTAAAGCACAGACAGCAACAATGTTCTATAAGCACAGGACAAATGGTGATGATCATAGTGAGGGAAAGGATTCACCTAGTTTTTTGCTGAATCTTATTGACACTCCCGGTCATGTGGATTTTAGCTATGAGGTGTCAAGGTCACTAGCAGCTTGTCAAGGCGTACTTTTGGTTGTTGATGCCGCGCAAGGAGTCCAAGCGCAAACTGTTGCTAATTTCTACCTTGCTTTTGAGGCCAACCTGACAATTGTACCTGTAATAAACAAGATTGACCAGCCAACTGCTGATCCTGATCGCGTTAAAGCCCAATTGAAATCAATGTTTGATCTTGACCCTAGTGATGCATTGCTAACATCTGCTAAAACTGGAAAGGGTCTTGAGCAAGTCCTTCCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGATTCATACTATGATGAATACAAGGGGGTAATATGCCATGTTGCTGTTGTTGATGGTATCCTGCGCAAGGGGGATAAGATTTCATCTGCTGCTACTGGTCAGTCATATGAAGCTTTGGATATTGGTATCATGCATCCTGAGCTTACACCTACTGGAATCTTGCTTACTGGTCAAGTTGGTTATGTTGTAAGTGGCATGCGTTCAACAAAAGAAGCCCGTGTTGGAGATACAATTTACCATACTCGAAACACTGTAGAGCCTCTCCCAGGATTTAAACCAGCAAAGCATATGGTTTTCTCTGGTCTTTATCCAGCAGATGGATCTGATTTTGAAGCACTCAACCATGCAATAGAGAGGCTGACATGTAATGATGCCAGTGTCTCTATTACTAAAGAAACTAGCACAGCTCTAGGTTTGGGTTTCAGGTGTGGATTTCTGGGCTTACTTCACATGGATGTTTTTCATCAACGGCTTGAACAGGAGTATGGAGCTCATGTTATCTCAACTGTTCCTACTGTGCCTTATATATTTGAATATTCTGATGGAAGCAAATTAGAAGTTCAGAATCCTGCTACGTTACCCTCTAATCCCAAGCAACGAGTGACAGCATGTTGGGAACCTACAGTATTAGCTACTATAATCATTCCTAGTGAGTATGTGGGACCAGTTATCACCCTTTGCTCTGAGCGTAGGGGTCAGCAGTTGGAGTACTCATTCATTGACAGTCAACGGGCATTCATGAAGTATCGCATGCCTTTGAGAGAAATTGTTGTTGACTTCTATAATGAATTGAAGAGCATAACATCAGGCTATGCATCATTCGATTATGAGGATGCAGATTATCAGCAATCTGATCTGGTGAAACTCGATATCCTCTTAAATGGACAACCTGTAGATGCGATGTCAACTATTGTTCATAACATGAAAGCATATCGCGTTGGGCGTGAACTAGTAGAGAAATTGAAGAAAGTCATAGACAGGCAAATGTTTGAGATAACGATACAAGCTGCCATTGGTTCAAAGATTGTAGCAAGAGAAACGATTTCTGCGATGAGGAAGAATGTTCTTGCAAAGTGTTACGGTGGCGATGTTACTCGAAAGCGAAAGCTGTTGGAAAAGCAAAAGGAAGGAAAGAAGCGAATGAAACGCATTGGCTCCGTTGATATACCGCAGGAAGCGTTCCATGAACTATTGAAGGTTTCATAG 2058 0.4038 MGYLSKTSRTLRQSNYLSLLRNSTFFPFNPLSSTTFHHQQRALLCSQSRQQNIKDKSAIDLSQYPPELIRNFSIIAHVDHGKSTLADRLLELTATIKKGHGQPQYLDKLQVERERGITVKAQTATMFYKHRTNGDDHSEGKDSPSFLLNLIDTPGHVDFSYEVSRSLAACQGVLLVVDAAQGVQAQTVANFYLAFEANLTIVPVINKIDQPTADPDRVKAQLKSMFDLDPSDALLTSAKTGKGLEQVLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDSYYDEYKGVICHVAVVDGILRKGDKISSAATGQSYEALDIGIMHPELTPTGILLTGQVGYVVSGMRSTKEARVGDTIYHTRNTVEPLPGFKPAKHMVFSGLYPADGSDFEALNHAIERLTCNDASVSITKETSTALGLGFRCGFLGLLHMDVFHQRLEQEYGAHVISTVPTVPYIFEYSDGSKLEVQNPATLPSNPKQRVTACWEPTVLATIIIPSEYVGPVITLCSERRGQQLEYSFIDSQRAFMKYRMPLREIVVDFYNELKSITSGYASFDYEDADYQQSDLVKLDILLNGQPVDAMSTIVHNMKAYRVGRELVEKLKKVIDRQMFEITIQAAIGSKIVARETISAMRKNVLAKCYGGDVTRKRKLLEKQKEGKKRMKRIGSVDIPQEAFHELLKVS 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03247 685 Pfam GTP-binding protein LepA C-terminus 577 683 IPR013842 -
Aip04g03247 685 Gene3D - 60 255 IPR027417 -
Aip04g03247 685 CDD EF4_III 380 455 - -
Aip04g03247 685 Pfam Elongation factor G C-terminus 490 575 IPR000640 -
Aip04g03247 685 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 247 IPR027417 -
Aip04g03247 685 CDD lepA_C 490 569 IPR035654 -
Aip04g03247 685 Gene3D Translation factors 279 372 - -
Aip04g03247 685 PRINTS GTP-binding elongation factor signature 71 84 IPR000795 GO:0003924|GO:0005525
Aip04g03247 685 PRINTS GTP-binding elongation factor signature 114 122 IPR000795 GO:0003924|GO:0005525
Aip04g03247 685 PRINTS GTP-binding elongation factor signature 149 159 IPR000795 GO:0003924|GO:0005525
Aip04g03247 685 PRINTS GTP-binding elongation factor signature 201 210 IPR000795 GO:0003924|GO:0005525
Aip04g03247 685 Hamap Elongation factor 4 [lepA]. 65 685 IPR006297 GO:0005525
Aip04g03247 685 Gene3D - 569 643 IPR038363 -
Aip04g03247 685 TIGRFAM small_GTP: small GTP-binding protein domain 72 247 IPR005225 GO:0005525
Aip04g03247 685 Gene3D - 455 568 - -
Aip04g03247 685 SUPERFAMILY EF-G C-terminal domain-like 489 583 IPR035647 -
Aip04g03247 685 PANTHER TRANSLATION FACTOR GUF1-RELATED 56 683 IPR006297 GO:0005525
Aip04g03247 685 SUPERFAMILY Translation proteins 283 369 IPR009000 -
Aip04g03247 685 CDD LepA 70 249 - -
Aip04g03247 685 CDD EF4_II 284 364 - -
Aip04g03247 685 Pfam Elongation factor Tu GTP binding domain 69 247 IPR000795 GO:0003924|GO:0005525
Aip04g03247 685 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 107 122 IPR031157 -
Aip04g03247 685 SUPERFAMILY EF-G C-terminal domain-like 381 458 IPR035647 -
Aip04g03247 685 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 67 292 IPR000795 GO:0003924|GO:0005525
Aip04g03247 685 Gene3D Elongation Factor G (Translational Gtpase), domain 3 373 454 - -
Aip04g03247 685 PANTHER TRANSLATION FACTOR GUF1, MITOCHONDRIAL 56 683 - -
Aip04g03247 685 TIGRFAM lepA: elongation factor 4 68 684 IPR006297 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03247 Aip-Chr4 126604935 126609933 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03247 69 210 Eukaryotic Initiation Factors Gene Family AT1G56070 40.278 4.86e-23 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03247 K21594 - gmx:100781092 1141.72