Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03246 ATGGAAGAGAAGAGAGTAAGTTCCATTAGTTTTGAAGATTCTGTTACAAAGGGTGAGGTGAAAGAAGAAAATGGTAGGTTGAAGATGATCACAGAAAGAGTAGAAGAGAATTATCACTCTCTTCAACTCCAATTCTTTGATATCCTTACAAAAAAAGCATTCAAAGAAGTTGTGAGTGATTCAGCTACTAACACAATTGGTGATGAAACTGAAGAGGAGCATGAACTTGTTTCACTTTGCCTTGGAAGGAATCCAAGTAAGCATAACAAAGATGTTGCAAGAATTGGAAACAACTCCAAAAACAAGGTTAATAAAGAAAATGAAGAGTTTGAAAAACCATGTTTAACTCTTGGATTAGACTCTAAATGTGTGCTGCCAAAGGAATCGGCAGAGGAAACTTTGTCATCAATAACACAGAAACATCAAGTGAAAGTGAAAAATAGTTCAAATGATGGAAGTTCAGATCAAATGCCTGCTAAGAGAGCCAGAGTTTCTGTTAGAGCTAGATGTGATTCTCCTACGATGAATGATGGATGCCAATGGAGAAAATATGGACAGAAAATAGCAAAAGGAAATCCATGTCCACGAGCATACTATCGTTGCACGGTCGCACCGGCATGTCCGGTTAGGAAACAGGTGCAAAGATGTGCTGAAGACTTGTCCATCTTGATCACAACATACGAAGGAACACATAACCATCCACTTCCATTTTCAGCATCAGCCATAGCTTCCACAACTTCTGCTGCAGCTTCCATGCTTATTTCAGGTTCTTCAGAGAGTCACAATTCTTCATTTTTTAAAAATGTGTCAACACTACACACTGGTGTATGTCTCGGTCAGCAGTTTGATCAATCAAGAGCAACAAAAAATGTCTTCCTACCAAACAATAATGTAACTTTAGACCTCACTTCTTCTGCTTCAAACACTTTATTACCTTCAAACACTTCTTCTGCTAACCTTTTCACAATGCCTATTCCTTTTGTGGAGAAAACACACATAATAAGGCCAGTTATGTTGAGAAACTCTTCAAGTTGGGGTAAGCATTTTTATGAAGAGTGCATGAGGAACCGAACTCTTCATCCTCCAAAGGATGCTTTTTTAGCAGAAACAATAACAAAAGCAATGAAAACAGATCCAAGTCTTCATTCTGTGATAGCTGCTGCAGTTTCATCTATTGTGGGGCAACAAGGATATTCAGCAAGTTGCAACAATCAAGAAGGGTCAGAGATTCTTATACCTTCAACTCAATTGGGATCTTCCATTCCCTTCAATCAAAGTAACAAAGGATACATAGAAATAGAAGGGTACTTCAAAAGATTGTTGTCCTCAAGTTCTGGTGCTGGAGACATGCTTCCATAG 1359 0.3841 MEEKRVSSISFEDSVTKGEVKEENGRLKMITERVEENYHSLQLQFFDILTKKAFKEVVSDSATNTIGDETEEEHELVSLCLGRNPSKHNKDVARIGNNSKNKVNKENEEFEKPCLTLGLDSKCVLPKESAEETLSSITQKHQVKVKNSSNDGSSDQMPAKRARVSVRARCDSPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPACPVRKQVQRCAEDLSILITTYEGTHNHPLPFSASAIASTTSAAASMLISGSSESHNSSFFKNVSTLHTGVCLGQQFDQSRATKNVFLPNNNVTLDLTSSASNTLLPSNTSSANLFTMPIPFVEKTHIIRPVMLRNSSSWGKHFYEECMRNRTLHPPKDAFLAETITKAMKTDPSLHSVIAAAVSSIVGQQGYSASCNNQEGSEILIPSTQLGSSIPFNQSNKGYIEIEGYFKRLLSSSSGAGDMLP 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03246 452 MobiDBLite consensus disorder prediction 134 156 - -
Aip04g03246 452 Pfam WRKY DNA -binding domain 176 234 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip04g03246 452 SUPERFAMILY WRKY DNA-binding domain 168 236 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aip04g03246 452 Gene3D WRKY domain 160 237 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aip04g03246 452 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 15 447 IPR044810 GO:0003700
Aip04g03246 452 MobiDBLite consensus disorder prediction 134 167 - -
Aip04g03246 452 ProSiteProfiles WRKY domain profile. 170 236 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip04g03246 452 PANTHER WRKY TRANSCRIPTION FACTOR 72-RELATED 15 447 - -
Aip04g03246 452 SMART WRKY_cls 175 235 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip04g03246 452 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03246 Aip-Chr4 126602398 126604806 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03246 19 250 WRKY Transcription Factor Family AT5G15130 50.775 3.37e-65 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Aip04g03246 WRKY 4.6e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03246 - - adu:107486739 838.565